Showing posts with label exobiology. Show all posts
Showing posts with label exobiology. Show all posts

Thursday, September 28, 2017

I’m Likin’ The Lichen


Biology Concepts – symbiosis, mutualism, lichens


The lycan is a subject better relegated a cryptozoology
blog. Along with the Loch Ness Monster, vampires, and
the Easter Bunny, cryptids are those animals for
whom there is little or no solid evidence, yet the search
for them by some devotees continues.
A current movie craze has been to replace werewolves with lycans, animals that can control there physical changes to wolf, and can survive under difficult conditions. I know of another organism that has even greater powers, but wouldn’t make a great movie monster – they don’t move and are very slow growing.

Lichens (not lycans) are some of the most intriguing species on Earth, and may very well be the most amazing organisms off Earth as well. Lichens don’t necessarily break a lot of biological rules; they just refuse to acknowledge that our rules apply to them. They write their own rulebook, and humans can’t come close to playing by their rules. They make us look like such wimps. In lichen gym class, we wouldn’t be picked last - we wouldn’t picked at all.

Lichens are symbiots of two completely unrelated organisms; one is the mycobiont, which is always a fungus. The other component is the photobiont, and can be either a green algae or a cyanobacteria. The fungal partner of the lichen makes up about 80% of the mass, but the algae or bacterial component is photosynthetic. Therefore, when they become a mutualistic symbiot, the mycobiont provides a structure and a foothold to a surface, while the photobiont supplies energy through photosynthesis.


Lichens provide food for many animals. For instance, the
Cladina Stellaris grows in the desolate Arctic. It provides
food for the resident reindeer, who we know from past posts
can disconnect its biological clock and feed all through the
day. The reindeer must be particular though, because it will
take the reindeer lichen decades to recover from grazing,
since it grows only 3-5 mm each year.
This is the first exception when dealing with lichens – what are they? They certainly aren’t plants, since they contain a fungal element and not plant element. But they aren’t fungi, since they also contain a bacterial (the cyanobacteria) or protist element (the algae). They are kings in search of a kingdom. Just like Lady Gaga, they defy classification as normal life!

Fungi are decomposers; they break down organic materials to produce nutrients and carbohydrates. But in the lichen, the photobiont produces glucose by photosynthesis, so there is no need for the fungi to decompose for energy. The lichen stores most of its soluble carbohydrate as sugar alcohols, which are made by the fungal component from the algae/cyanobacteria-produced glucose. Therefore, the fungus provides a carbohydrate storage mechanism as well as a structure. These aspects give lichens the ability to live where neither the fungus nor the algae could live on its own.

The second amazing aspect of the lichen symbiosis is that the lichen doesn’t look like either the fungus or the algae that makes it up. It also doesn’t look like a mix of the two. The lichen creates a whole new morphology, with the photobiont housed below a layer of the modified fungus. In the case of lichens, you add 2 + 2 and get a Chevy.

The thallus is the body of the lichen (latin for “green shoot”). In most cases, the thallus is a layer of the fungus, called a cortex, with the photobiont house just below the cortical layer. Enough light still reaches the algae or cyanobacteria in order to make photosynthesis possible.  Below the photobiont layer is the medulla, and can include a stringy (hyphal) fungus layer or maybe just the gelatinous photobiont. Finally, some lichens will have a lower cortex layer of fungus as well. The take home message is that neither the fungus nor the algae or cyanobacteria take on any of these forms UNLESS they are part of a lichen – it is a completely different structure.

Not every lichen has a lower cortex layer, but almost all
have the top cortical layer of tough fungal material. This
layer protects the lichen from predation and dessication
(it does nether spectacularly well). The photobiont lives
primarily in the subcortical symbiont layer, while the
medulla is spongy and has many fungal filaments. The
rhizine connects the lichen to its substrate, but many
lichens are erhizinate, they do not have rhizines.
The mycobiont is the more flexible of the two components; literally thousands of different fungi can act as the mycobiont. On the other hand, only 100 or so different photobionts exist. Most common of these are of the species Trebouxia. They are green algae which rarely live on their own, they have become specialized for symbiotic life as a lichen.

The combination of these two components yields the over 17,000 different lichens that have been identified. The combinations are also flexible, a lichen may use different photobionts during its life, and identical lichen types may use different photobionts even within the same general area.

The combinations of decomposer and autotroph that make up lichens are hearty and diverse. Fully 8% of the Earth’s surface is covered with lichens, not bad for something so small. More amazing is that lichens can survive in places that support almost no other life. Lichens and endolithic bacteria are only living things in the McMurdo Dry Valleys of Antarctica, as well as the Atacama desert of Chile, often called the two driest places on Earth (I think they forgot about Lynchburg, TN).

The McMurdo Valleys (4,800 sq. km) are a cold desert environment (Water, Water, Everywhere). They are almost ice and snow free, even though they are on the frozen continent of Antarctica. Less than 200 mm (8 in) of precipitation is available each year, and most of this is from summer glacier melt.


The Atacama Desert in Chile is a desolate wasteland,
no offense to any inhabitants. It probably has its
nice parts too.  Parts of the desert have had no
recorded rainfall..... ever. This leads to some
interesting formations, like these geometric salt
patterns, very appropriate for this series of posts.
The average rainfall in the entire Atacama Desert is even less, only about 1mm (0.04 in) per year, and many weather stations have never recorded any precipitation at all. The lichens survive on the water vapor that reaches them from the coastal fog,which comes from 150 km (80 miles) and a mountain range away. Interestingly, an extreme Antarctic cold front brought 80 cm (31.5 in) of snow to the plateau in July of 2011! This was enough to bring wildflowers to the Atacama, in places they had never been seen before.

Despite (or perhaps because of) these arid environments, lichens are the major form of life in the Atacama Desert and McMurdo Valleys. Most organisms cannot survive a loss of 20% moisture, but lichens can do just fine when 90% dehydrated. While their growth may be retarded, they quickly make up for it by absorbing up to 35x their mass in water when it is available. Lichens dry out slowly because of the dense cortex of fungus on the outside, so they can still photosynthesize despite long arid periods.

Even more exceptional, the lichen symbiot is less than 50% water, even on a good day. Mushrooms are 92% water, and algae or bacteria are typically 96% water, but when you put them together as a lichen, their normal water content is some 40-45% lower. This is how the lichen can live in places that would not support either of its components on their own – amazing.

The deserts, both cold and hot, allow the lichens to show off another of their skills. Lichens can withstand extreme temperatures and wild swings in temperature. Scientists keep thinking up new ways to torture them. Lichens survived a bath in liquid nitrogen at -195 ˚C. Not satisfied that they had been treated harshly enough, European Space Agency scientists strapped some lichens to a rocket and exposed them to the cold and radiation of outer space for 14.6 days. Cold, hot (shielded re-entry), vacuum, UV, cosmic rays – the lichens survived just fine. Because of this will to live, exobiologists (scientists who study what life on other planets might be like) study lichens as a model alien life form or as an organism with which we might seed other planets.

Lichens (or something similar to them) are likely to be found on other planets, but they also may affect other forms of life off Earth. A recent study by performed in Italy and the UK has shown that the few animal types (rotifers, nematodes) that are able to survive dessication as lichens can are influenced greatly by their environment. They may have different ways to survive drought, but statistical modeling shows that the type of lichen they are found in has more to do with their survival in drought or even in space than their own tolerance mechanisms.


Lichenometry is the art and science of investigating
how long a surface has been exposed. For example,
moraines are gatherings of stones at the edges of
glaciers. How long has it been since the glacier receded
from that spot? Lichens grow at a predictable rate given
a known environment, so measuring the size of a lichen
will give good estimate of how long the surface has been
available to be lichenized (just made up that word).
As a result of the poor environments where lichens can be found (although they also grow just fine in temperate areas- just look outside your front door), lichens are the slowest growing life forms on Earth. Usnea sphacelata, which looks like a small forest of bonsai, grows about 0.01-1 mm per year. Usnea can only grow on about 120 days per year, but they live a very long time. An age of 200 years is not unusual, the record is about 4500 years.

In a defined area with a defined weather pattern, lichens may grow at a very slow rate, but it is a very consistent rate. This predictability makes them good for dating other structures, a process called lichenometry. For instance, lichens can be use to estimate how long a rock face has been exposed by a retreating glacier. Once the rock is uncovered, lichens will soon colonize it and grow at a consistent rate. Once you know the size of the lichen, identify the type of lichen, and know its growth rate for that area, an age for the exposure can be calculated.

Next week we will talk more about the amazing properties and abilities of lichens, but one last tidbit for today. For anyone who has read Peter Rabbit or Benjamin Bunny to their child, Beatrix Potter is a familiar name. Before becoming a famous author, Beatrix made a living by illustrating other author’s books and doing some scientific illustrations. She was an outdoorsy girl, and her pictures of lichens led her to study them on her own.


Beatrix Potter wrote more than 20 childrens classics; the
illustrations were her own and are perhaps more iconic than
her prose. But she started out working on lichens, and was a
devout “Schwendenerist,” a follower of Simon Schwendener’s
idea of lichen symbiosis. I got the chance to collaborate with
one of Simon’s distant relatives a few years ago. Hi Reto!
While the dual hypothesis of lichens had already been put forth by Simon Schwendener, it was not well received in England. Potter used microscopy and her drawings to generate evidence for Schwendener’s hypothesis. However, she was not a scientist, and worse, she was a woman – so she couldn't present her evidence to the botanists of her time. Her uncle was Sir Henry Roscoe, the eminent scientist who developed the first flashbulbs for photography (along with another scientist named Bunsen – name sound familiar?). He supported her and read her papers into the scientific record, but she could never make name for herself as a scientist in that environment, so she turned to writing. It was a lucky thing for us all – a world without Flopsy and Mopsy is too horrible to imagine.


Fontaneto, D., Bunnefeld, N., & Westberg, M. (2012). Long-Term Survival of Microscopic Animals Under Desiccation Is Not So Long Astrobiology, 12 (9), 863-869 DOI: 10.1089/ast.2012.0828
For more information or classroom activities on lichens, exobiology, or lichenometry, see:

Lichens -

Exobiology –

Lichenometry –
www.geog.uvic.ca/dept2/faculty/smithd/.../06%20Geog%20477.pdf

Wednesday, June 26, 2013

The Colors of Alien Plants

Biology concepts – photosynthesis, chlorophyll, pigmentation, astrobiology, exoplanet, dormancy

The King Crimson Norway Maple in our front yard is
at least 50 ft. tall. It isn’t a rare tree, but I like it a lot.
In fact, it is invasive and native only in Asia. You can’t
plant on in several eastern states in the US, they are
taking over in some deciduous forests.
There is a large King Crimson Norway Maple (Acer platanoides 'King Crimson) in our front yard. Healthy and round, it is a fine showpiece. We are also blessed with a 15-foot tall burning bush (Euonymus alata 'Compacta') not more than thirty feet from the maple. The burning bush straddles the property line with our neighbor, so when it needs work, its theirs, and when it is beautiful in autumn, it’s ours. Together, they make our landscaping come alive with color and provide ample shade.

They’re autotrophs (auto = self, and troph = feed) as are most plants. They make their own carbohydrates from sunlight, carbon dioxide, and water. Our sun radiates light energy that can be captured and transduced to chemical energy, but not all stars are the same and not all plants are green, so…..

Question of the Day: How can starlight support non-green plants and could it might it be different elsewhere?

Chlorophyll is one of several plant pigments, and chlorophyll itself comes in several flavors, but the primary plant chlorophylls are a and b. The “a” version is the major pigment for photosynthesis, absorbing light at the two ends of the visible spectrum – blues and reds (see picture). Green and yellow light get reflected, and this is what we see. Chlorophyll probably evolved to use red and blue because blue is high energy and red is abundant.

Chlorophyll b is an accessory pigment that plants use in smaller amounts. The “b” version absorbs light from near the same wavelengths as chlorophyll a, but they pass the energy on to the “a” version for use in photosynthesis. The two chlorophylls differ at only one of their 55 carbon atoms.

Green light is higher energy than red light, but less abundant
in our atmosphere. Blue light is much higher energy, so it
can power a lot of photosynthesis even if it isn’t that abundant.
Therefore, is it surprising that our plants appear green,
chorophylls absorb and use red light because it is abundant, and
blue light because it is high energy. Green isn’t worth bothering
with and is reflected.
There are also chlorophylls c, d, and f. Chlorophyll c is also an accessory pigment which transfers energy to chlorophyll a, but it is very different structurally. Chlorophyll c is found only in some marine algae, and actually comes in three similar structures; c1, c2, and c3.

Chlorophyll f absorbs in the near infrared (NIR, not visible but close to red) range. Discovered in 2010 as the major chlorophyll in stromatolites of Australia, it is the first new chlorophyll identified in the last 60 years. However, its usefulness in photosynthesis has not yet been confirmed.

Chlorophyll d, on the other hand, is found to be the primary chlorophyll in cyanobacteria. A recent study showed that this chlorophyll absorbs NIR light as well. Though lower energy than red light, but the 2012 paper shows that the cyanobacteria are just as efficient at photosynthesis as plants with chlorophyll a. This works out well since in water, the higher energy wavelengths are absorbed near the surface and the only light that penetrates to the cyanobacteria is the NIR.

This is important for the science of astrobiology, predicting what life might look like on other planets and trying to identify which planets might hold life. Knowing that low energy light can still power photosynthesis tells us that we should not discount the planets around red dwarf stars. These stars have light of different wavelengths than our sun. Autotrophs from planets around red dwarfs may use NIR chlorophylls exclusively; therefore they might reflect all light and appear almost white.

On the other hand, light from different stars might drive evolution of different chlorophylls, so plants on other planets might not be green at all, but could reflect just lower energy light and appear red, or reflect just higher energy waves and be blue – blue plants, cool!

Current possible habitable exoplanets have been numbered and are
under investigation. Scientists look for planets in the habitable zone,
meaning they are of a temperature to have liquid water. They also look
for rocky planets that are about the same size as Earth to provide the
same amount of gravity. They also look for planets around stars with the
same kind of light as our sun – maybe they shouldn’t limit it to stars like
ours. Those with “Kepler” in their name come from the orbiting Kepler
telescope, which is now in danger of never working again.
Based on the light reflected from exoplanets (planets outside our solar system), a 2007 study in the journal, Astrobiology, says we might be able to predict the color of their possible plants and the wavelengths they might use. Furthermore, a study in 2012 stated that in binary systems that have two stars, each giving off different wavelengths of light, might force the evolution of dual photosynthetic mechanisms, leading to perhaps alternating plant colors, depending on which sun is shining.

Chlorophylls provide energy through photosynthesis, but they also have a cost. The old saying, “It takes money to make money” applies to plants as well. It takes energy to make chlorophyll, so it only pays to make chlorophyll when there is ample sunlight to put through photosynthesis. When the daylight get shorter on Earth, the profit margin for producing chlorophyll goes down, so the plant just stops making it.

This is when we start to see the other pigments, those that might play a role on other planets. Other major pigments are the yellow, orange or red carotenoids and the flavonoids. When the plant reduces chlorophyll production, the green color is then a lower percentage of the total pigment in the leaf and the other colors can show through. This gives the bright colors of fall foliage.

But these same pigments can make it seem that a green plant is a non-green plant. Plants that produce large amounts of purple, brown, or maroon pigments have leaves that are so dark that they appear black. Purple, black, and red plants have chlorophyll aplenty, it’s just that the color is masked by other pigments.

Carotenoids are a diverse group of pigments, but yellows and oranges seem to predominate. Carrots get their color from carotene, one type of carotenoid. Xanthophyll is another, which reflects yellow light wavelengths. While chlorophylls absorb red and blue light, carotenoids absorb the blue wavelengths, as well as green light, reflecting only the lower energy yellow, orange, and red light.

Retinal is the major pigment used in our vision. Transduction
of light energy into chemical energy and a nerve impulse is
powered by a cis- to trans- conversion of part of the molecule.
Is it any wonder that this ability to capture light energy can
also be applied to photosynthesis.
By absorbing the green light that would usually be bounced back from chlorophyll, they can prevent us from seeing them as green. Additionally, non-green plant pigments can contribute to photosynthesis, serving as accessory pigments to chlorophyll.

Carotenoids absorb light energy, and while they can’t convert this directly to chemical energy through photosynthesis on Earth, they can transfer this energy to chlorophyll, which then carries it through photosytems I and II of photosynthesis.

In addition, some archaea use retinal (another pigment) to extract energy from the green wavelengths of light. So, why aren’t plants truly black? Wouldn’t it be most efficient to absorb all wavelengths of light for photosynthesis and reflect nothing, thereby appear black to us. Wouldn’t this be the most efficient use of the sun’s energy?

The answer is easy – evolution doesn’t work to maximum efficiency. Natural selection is random and works with what it is given – nothing in nature is engineered by decision to maximize efficiency. But that doesn’t mean there can’t be black plants around other stars, having undergone completely different evolutionary paths.

Even if something used carotenoids, retinal, xanthins and chlorophylls, could it extract energy by absorbing all light waves that strike the plant? Um, no. No plant comes close to absorbing all the light that it can use, and no plant is made of only pigment molecules. There will always be reflections from other molecules.

Plus, if all light was absorbed, can you imagine how hot the plant would get? Imagine a blacktop parking lot being alive; you can fry an egg on an asphalt surface during the summer!

Purple heart (left) and black pepper pearl (right) have lots of pigments
that make them colored purple and almost black. However, they have
chlorophyll too, it is just masked by the other colors. They do
photosynthesis just like other plants, but they certainly look
interesting.
Carotenoids are longer lived than chlorophyll. When autumn comes around, the plant breaks down chlorophyll so that the components can be reused, but the carotenoids stick around much longer. Therefore, the yellows and oranges are not masked by the greens, and the leaves change colors.

Anthocyanins of the flavonoid class are another set of plant pigments. These colors are also more stable than chlorophylls. Our King Crimson Maple makes a lot of red anthocyanin pigments that absorb the green light coming in to the leaf and perhaps a lot of the green light reflected by the chlorophyll. Therefore, as the amount of the anthocyanins in a leaf increases, the green color is masked by the red.  

Plants can use anthocyanins as “sunscreen” because in addition to absorbing green light, they also absorb ultraviolet light. Even though plants and animals need oxygen, they can also be damaged by the production of oxygen radicals (highly reactive compounds) produced by ultraviolet light energy striking oxygen-containing molecules and breaking them apart. Ultraviolet light can especially damage DNA, so anthocyanins can protect cells from mutations that might lead to inefficient activity or even cancer. It might be that on other planets, anthocyanins could be photosynthetic and plants live on UV light.

Sunscreen protects our skin from damage, just as red pigments protect the plant leaves. Even more, eating plants high in anthocyanins, like red grapes, blackberries, and blueberries, can transfer those antioxidant molecules to us for protection of our tissues and blood…. but don’t eat your Norway Maple.

On the left is our King Crimson. The yellow arrow shows the darker leaves
that get more sunshine. The green arrow shows the shaded leaves that
make much less red pigment because they don’t need the protection. On
the right is the burning bush in the open, so it has more carotenoids that
show up in the Fall.
When fall comes, or it is time for the fruits to ripen, plants start to produce even more anthocyanins (as in green apples turning red), because as other compounds in the plant breakdown more oxygen radicals will be produced. Therefore, the plant needs more protection.

Returning to our maple and our fire bush, it would seem that the maple leaves are dark red, almost purple, because of the high anthocyanin pigment concentration relative to the chlorophyll concentration (red + green = almost purple). But not all of them are purple (see picture). Other examples of this, the purple heart plant and the oxalis regnelli, remain purple all through their growing cycle. 

Our burning bush is deep red in autumn because it is not shaded at all, so it produces more anthocyanin to protect its leaves in the summer. If it were shaded part of the time, it might be more pink. If the leaves need protection, they make more anthocyanin, and if not, they don’t.  Don't ask me about shade on other planets.

Next week, your Fourth of July ice cream may have a side effect - ever wonder how "brain freeze" works?



Behrendt, L., Schrameyer, V., Qvortrup, K., Lundin, L., Sorensen, S., Larkum, A., & Kuhl, M. (2012). Biofilm Growth and Near-Infrared Radiation-Driven Photosynthesis of the Chlorophyll d-Containing Cyanobacterium Acaryochloris marina Applied and Environmental Microbiology, 78 (11), 3896-3904 DOI: 10.1128/AEM.00397-12

O'Malley-James, J., Raven, J., Cockell, C., & Greaves, J. (2012). Life and Light: Exotic Photosynthesis in Binary and Multiple-Star Systems Astrobiology, 12 (2), 115-124 DOI: 10.1089/ast.2011.0678  

Kiang, N., Segura, A., Tinetti, G., Govindjee, ., Blankenship, R., Cohen, M., Siefert, J., Crisp, D., & Meadows, V. (2007). Spectral Signatures of Photosynthesis. II. Coevolution with Other Stars And The Atmosphere on Extrasolar Worlds Astrobiology, 7 (1), 252-274 DOI: 10.1089/ast.2006.0108