Showing posts with label cilia. Show all posts
Showing posts with label cilia. Show all posts

Wednesday, February 11, 2015

Thinking Skinny Thoughts Won’t Help


Biology concepts – undulipodia, primary cilia, chemosensing, obesity, depression, hydrocephalus, lithium

Winston Churchill once said that men occasionally stumble on the truth, but most people pick themselves up and carry on as if nothing had happened.


Gregor Mendel was Augustinian monk who really
joined the order because they would allow him to
study and learn for the rest of his life. Sounds like
the gig I would enjoy. Since he was a monk, do you
think he got angry that his discoveries were
ignored for 35 years?
In some cases we are shown the truth but don’t recognize it, as with Gregor Mendel’s discovery of the laws of genetics. Using his various pea plants, the Augustinian friar’s work was presented in 1865 and published 1866 – and then was forgotten for decades.

Mendel's paper was referenced only three times over next 35 years and his work wasn’t rediscovered until 1900. Two scientists gave Mendel much credit for the primacy of his work, but it really wasn’t until a fourth individual, William Bateson, came along that Mendel became widely known and his work accepted. It was Bateson coined the phrase “Mendel’s laws of inheritance.” Why did he champion Mendel so greatly – because he questioned Darwinism as incomplete. Well, it was incomplete at that time.

Just as the world was rediscovering Mendel, the primary cilium was discovered for the first time. The world didn’t exactly ignore it; we just had to wait for technology to catch up. Zimmerman first described the solitary hair sticking out of most cells in an 1898 German paper, but the next significant paper discussing primary cilia didn’t appear until 1961! We had to wait for the electron microscope and molecular biology to catch up.


The electron microscope was the piece of
equipment that allowed for deeper investigation
of the primary cilium structure. Even though the
first electron ‘scope was operational in 1931 (M.
Knoll and E. Ruska, inventors), it still took 30 years
to turn it’s power on the primary cilium. Was it
considered just an immotile cilium, or did someone
suspect it had more jobs to do? Molecular biological
techniques in the 1990’s answered that question and
led to an explosion of study on the solitary antenna
of most cells.
Last week we discussed how primary cilia are like the antennae of cells, they stick out into the extracellular environment and react to flow pressure (kidney tubule cells), vibration (hair cells of cochlea), chemicals (hormones and such) or even light (photoreceptor cilia). Now we’re realizing some of the amazing things that this sensing controls – your brain for instance.

You know that your brain works by transmitting electrical impulses through specific neural pathways. But chemistry in the brain is just as important as electricity. Hormones, neurotransmitters, even non-chemical signals like temperature and flow are converted to chemical and electrical signals via primary cilia.

As with so many other things, we learn biology best by studying what happens when things go wrong. You won’t believe the diseases that are being linked to this most innocuous of cell structures. Without any exaggeration, primary cilia make you smart, skinny, and happy. Let’s find out how.

Inside your brain are fluid filled cavities called ventricles. The ventricular system of the brain is connected through the ventricles and travel part way down your spinal column as well. They are filled with cerebrospinal fluid (CSF) and this fluid has many functions.


Here is the ventricular system of the vertebrate
brain. Blue = lateral ventricles, cyan= inter-
ventricular foramina, yellow = third ventricle,
red = cerebral aquaduct, purple = fourth ventricle,
green = central canal. What the image doesn’t show
is the connection that allows CSF to surround the
brain in the subarachanoid space, between the
brain and the skull. This is where 85% of the
CSF can be found.
Like an internal helmet, one of the functions of the CSF is to cushion the brain, acting as a shock absorber. But it does so much more than that. CSF also stabilizes the chemistry of the brain, and helps with blood perfusion by mediating the pressure in the cranium. Finally, the CSF removes waste products from the central nervous system.

The cells that line the ventricles are neuroepithelial cells called ependymal cells. They have motile cilia (2˚ cilia), as well as microvilli – which we learned last week aren’t cilia-like at all. The ependymal cell cilia beat in a specific direction depending on where they are in the system. The coordinated beating keeps the CSF flowing through the ventricles; flow is key to its functions.

The microvilli have a different job; they absorb CSF and transfer it into the brain tissue as a way of keeping the brain in the proper chemical environment. In this way, it helps mediate the CSF functions described above.

But there is a second cell type in the ependymal layer. B1 cells are pre-ependymal cells. When called upon, they differentiate to form more ependymal cells. These B1 cells are located just below the ependymal layer, but they have small areas where they stick up and touch the CSF. And here they each have a primary cilium.

A 2014 study showed that the B1 primary cilia actually control the function of the ependymal cell motile cilia. And since the motile cilia of B1 cells control pressure and flow of CSF in the ventricular system, it’s really the primary cilia who are in charge.

Because of this, a problem with the motile cilia of the ependymal cells or the primary cilia of B1 cells leads to disrupted CSF control and hydrocephalus. Hydrocephalus (hydro = water, and cephalo = brain) leads to increased intracranial pressure and this is lethal for neural tissue. Mental retardation, other complications, and death are the results of hydrocephalus.

So we already see that these short projections that were ignored for so long have one crucial job in the brain. But there’s more. It isn’t just their presence that matters; it’s their length.


Huntington’s chorea, or just plain Huntington’s
disease, is insidious; it’s lethal and there is no
treatment. It results in debilitating movements of
the motor system. Even though the genetic mutation
is with you your whole life, the disease doesn’t show
up until middle age, probably after you have had kids.
So you don’t know that you passed it on until it’s too
late. There is a test for it – would you want to know
if you had it?
Primary cilia have specific lengths in different cell types. Too long or too short and it’s like they aren’t there at all. In kidney tubule cells, increased urine flow bends the cilia, so they transmit signals to the cells, but too much signaling would be bad. Increased flow shortens the primary cilia so they become less responsive, and this is the control mechanism. In the ependymal layer, both motile and primary cilia length are crucial.

A genetic problem in a single cilial gene leads to a disease called Huntington’s chorea (means dance for the strange movements the patients make). A 2011 paper showed that the mutation lengthens both motile and primary cilia in the ventricles.  This in turn alters the beating of the motile cilia and disrupts flow of the CSF. This isn’t the only defect in the disease, but changes in CSF are thought to exacerbate the disease.

Interestingly, the changes in intracranial pressure via primary cilia changes can lead to obesity. How could CSF and eating be connected? Well, in a couple of ways – let’s investigate further.

There are several syndromes that include obesity in their list of symptoms, diseases like Bardet-Biedl syndrome, Carpenter syndrome, and others. The commonality in these diseases is that there are mutations that affect some aspect of primary cilia function, production, or maintenance. Changes in primary cilia can affect your weight?


No big message here, just thought the primary cilium
looked like Alfalfa from Our Gang. Length is crucial for
primary cilia– I suppose Alfalfa kept his a particularly
length too.
A 2007 paper narrowed down the subset of cells where the primary cilia are disrupted by putting different primary cilia under the control of different regulators in mice. Then they could wait until the mice grew up and turn off the primary cilia in various cell types. They found that it is just the POMC neurons in the hypothalamus that regulate obesity. This means that it is a brain and behavioral issue, not a problem with energy metabolism in the body.

POMC neurons make alpha-MSH and multifunctional hormone. This is released from the POMC neurons and acts on downstream pathways to tell you to stop eating. If the primary cilia on the POMC neurons are too short or absent, you experience hyperphagia (hyper = beyond, and phagia = eating), ie. compulsive eating. You just can’t stop eating.

Many of the syndromes that start as primary cilia problems show both compulsive eating AND hydrocephalus. So this explains how hydrocephalus may affect obesity in one, way, but there’s another. If you have a brain injury that damages the ependymal or B1 cilia, then hydrocephalus might result. The POMC neurons are located right next to the third ventricle, so increased intracranial pressure during hydrocephalus can damage them and lead to compulsive eating directly.


Notice how close the third ventricle is to the POMC
neurons of the hypothalamus. Hydrocephalus alone can
induce changes in primary cilia length on them so they
won’t respond to insulin or leptin. Then you
eat compulsively.
The question remains as to what signal(s) the POMC primary cilia are sensing in order to tell you to stop eating. It is probably several, chemicals that say you are full or have enough fat. Leptin, the hormone released by fat cells is certainly one of them. A 2014 study in obese mice with leptin deficiency or leptin resistance proved this. The primary cilia on POMC neurons in hypothalamus are short in these mice due to lack of leptin signaling, and therefore they don’t work well and don’t stimulate alpha-MSH release.

So, here we have a miniscule part of your neurons cells that, if not exactly the needed length, can take away your intelligence AND your beach-ready physique. But it gets worse.

Many of these same ciliopathies (disease of cilia function) are also associated with clinical depression. The problem is, we don’t know how they lead to depression. Depression is often thought to be a problem of serotonin signaling in the brain, but it can be multifactorial. Here’s one interesting result though – lithium lengthens primary cilia.

Lithium is used to treat depression, and we don’t yet really know why it works. But lithium also increases the length of primary cilia in many cell types of the brain. Considering that many depressed people gain weight, could depression and compulsive eating be linked by primary cilia length? Lithium treats them both. This could explain why people coming out of depressive episodes often lose weight.

The popular soft drink &-Up contained lithium citrate
until 1950. It is used as a mood stabilizer now, and we
know it promotes weight gain, but here they advertize it
as slenderizing. The name, 7-Up, is a mystery, but the
atomic mass of lithium is seven - hmmm.

Sounds like we’re really on to something here. People who are treated for depression and get better often lose weight. Is it because they a) feel better and then do more activity, or is it because 2) their POMC primary cilia are longer and this suppresses their appetite?

No way for number two. Biology is never that simple. It turns out that one of the major side effects of lithium treatment for mood stabilization is weight gain. It has to do with lithium affecting the function of the thyroid gland, this being one of the major regulators of your metabolism. Your metabolism slows down and you gain weight.

Maybe if we just inject the lithium into the brain ventricles…. You want to volunteer for that weight loss program?

Next week, how can primary cilia control whether mankind ever gets to step foot on Mars or help the Enterprise on its five year mission to seek out new worlds? By controlling bones….. no, not Bones McCoy, just bones.




Tong, C., Han, Y., Shah, J., Obernier, K., Guinto, C., & Alvarez-Buylla, A. (2014). Primary cilia are required in a unique subpopulation of neural progenitors Proceedings of the National Academy of Sciences, 111 (34), 12438-12443 DOI: 10.1073/pnas.1321425111

Han, Y., Kang, G., Byun, K., Ko, H., Kim, J., Shin, M., Kim, H., Gil, S., Yu, J., Lee, B., & Kim, M. (2014). Leptin-promoted cilia assembly is critical for normal energy balance Journal of Clinical Investigation, 124 (5), 2193-2197 DOI: 10.1172/JCI69395

Davenport JR, Watts AJ, Roper VC, Croyle MJ, van Groen T, Wyss JM, Nagy TR, Kesterson RA, & Yoder BK (2007). Disruption of intraflagellar transport in adult mice leads to obesity and slow-onset cystic kidney disease. Current biology : CB, 17 (18), 1586-94 PMID: 17825558

Keryer, G., Pineda, J., Liot, G., Kim, J., Dietrich, P., Benstaali, C., Smith, K., Cordelières, F., Spassky, N., Ferrante, R., Dragatsis, I., & Saudou, F. (2011). Ciliogenesis is regulated by a huntingtin-HAP1-PCM1 pathway and is altered in Huntington disease Journal of Clinical Investigation, 121 (11), 4372-4382 DOI: 10.1172/JCI57552

Miyoshi, K., Kasahara, K., Miyazaki, I., & Asanuma, M. (2009). Lithium treatment elongates primary cilia in the mouse brain and in cultured cells Biochemical and Biophysical Research Communications, 388 (4), 757-762 DOI: 10.1016/j.bbrc.2009.08.099




For more information or classroom activities, see:

Ventricular System –

Huntington’s disease –

POMC –

Lithium -



Wednesday, February 4, 2015

An Immovable Moving Part- That’s Just Cilia!


Biological concepts – primary cilia, sterocilia, kinocilium, Usher syndrome, actin, microtubule, signal transduction, sensory receptor, mechanoreceptor


The USS Oriskany (above) was scuttled in 2006 to
create an artificial reef off of Pensacola Florida. In
2012, the US government effectively ended its policy
of creating artificial reefs this way because of concern
for leaking toxins from the ships to the marine life. But
is was a good way to find a new job for something broken.
Naval vessels are built to move through the oceans. When they can’t, they get fixed or they get decommissioned. As broken vehicles they have no use. Or might they? Some have been re-purposed as man made reefs.

Something that seemed broken because it couldn’t move was given an important new job that didn’t require motility. Remember that analogy as we talk about today’s subject in cilia. Although the order might be reversed.

We spoke last week about how nematodes are the only animals that don’t have cilia. Eukaryotic cilia and flagella (together, the undulipodia) are organelles that move, and in turn may move cells. It turns out that cilia have some exceptions – some don’t beat, and some can’t move at all - so what good are they?

Motile cilia, the kind we have been talking about for the past couple of weeks, are also called 2˚ cilia. If there are 2˚ cilia, I think that pretty much implies that there must 1˚ cilia – and they’re what we will talk about today.

Primary cilia, while less well known, are found on many more cell types than are motile cilia. Motile cilia in mammals are located on male gametes (as flagella), on respiratory epithelium of the lower and upper respiratory tract, fallopian tubes near the ovary and epididymal cells of the testes, and the ependymal cells lining the ventricles of the brain.

Primary cilia are apparent on cells of most types, when they are quiescent (just hanging out, doing it's job). If the cell re-enters the cell cycle and starts to divide or differentiate, the primary cilium will resorb and then reappear in daughter cells once they become quiescent.


Primary cilia have basal bodies and IFT, but their
microtubule structure is different. They don’t have the
inner singlet microtubules, so the outside ones can’t slide
past one another. They do have outer dynein arms, and
those are important for retrograde IFT. See below,
kinocilium don’t even have the outer arms.
Primary cilia are 9(2) + 0 in the axoneme, which they makes them different than motile cilia (see picture and this review). Primary cilia are missing the two central microtubule singlets. They are also missing all dynein, both the inner and the outer arms. This is why they are immotile, sort of.

Another exception with primary cilia is that their microtubule axoneme can change as it goes out to the end of the cilia. It may start out as 9(2) + 0, but at the distal (far) end it's 9 + 0 in nematodes, algae, and in the nose, pancreas and kidneys of vertebrates. All of those count as exceptions too!

In addition, primary cilia are of differing lengths, but most are much shorter than motile cilia. Some don’t even extend from the surface of the cell membrane. However, they're built by IFT (intraflagellar transport) just as 2˚ cilia are, and IFT is important for their functions as well.

So, can a broken cilium have a specific job? If they don’t beat to move a cell or the environment around the cell, then what do primary cilia do? The answer is - just about everything. Primary cilia serve as mechanoreceptors, chemoreceptors, photoreceptors, as well as osmolarity, temperature, or gravity receptors. Think of primary cilia like weather balloons. They stick out into the environment and probe the conditions in the area. They send the data back and the cell can act on it.

As mechanoreceptors, primary cilia might not beat, but they can be moved. They bend in response to flow across the surface and the bend brings a pivot at the level of the basal body – yes, primary cilia have basal bodies just as motile cilia do.


Kidney cells that line the tubules have primary cilia to
a change in calcium influx. The change is then
transferred to the adjacent cell via calcium channels
that cross both membranes.
The kidney cells that line your urine-filled tubules have primary cilia that stick out into the urine river. As the urine flow speeds up after your third diet coke in the last hour, the primary cilia bend and transmit a signal to the cell. This then signals the cells to ramp up their filtering functions, pulling water back in or excreting urea, etc.

Primary cilia have an asymmetry so that they recognize right from left. In the kidney, the flow is based on orientation, all primary cilia bend in the same direction, toward the anterior. The anterior bend signals for increased calcium influx and then this signal is transmitted to adjacent cells. The uniform gradient (a-p) works cell to cell, and this leads to consistent a-p orientation of the mitotic spindle (which also uses basal bodies in the form of centrioles). The result is that the progeny cells of dividing renal epithelium have the same orientation as the parent they replace.

Back to our nematodes from last week. Primary cilia are the only cilia roundworms have. C. elegans, the roundworm that is used as a laboratory model, is made up of exactly 959 cells – exactly. Sixty of those cells, all sensory neurons, have primary cilia that stick out into the environment via pores called sensillae.

The left photomicrograph has labeled dendrites for sensory
neurons in C. elegans. The right cartoon shows how the
primary cilia from these neurons stick into the pore that
then helps them sense the environment around
the roundworm.

It’s through the interaction of these primary cilia with the worm's immediate environment that it senses its world. This is what passes for a roundworm brain – but your brain has them as well. Especially in the retina of your eyes.

The photoreceptors that absorb light energy and transfer it to electrical impulses are located on a single primary cilium on each retinal cell. The axoneme is used to move photosensitive pigments (like retinal in rhodopsin, see below) back and forth from the receptor to the cytoplasm.

Primary cilia also act as chemoreceptors. In brain proper, they work in formation of new memories – mice without primary cilia can’t remember new objects or recognize objects they have already learned. They can remember the location of the object just fine, just not the object itself. We will talk about primary cilia in the brain much more next week.

Now we can take this discussion a couple of steps further to talk about two ciliary exceptions. There are nonmotile 1˚ cilia, motile 2˚ cilia, and then a third structure called a kinocilium. From the Greek for moving eyelash, the kinocilium is poorly named. Described in guinea pigs in 1989, they don’t move like a blinking eyelash or even like a motile cilium; they lack the inner dynein arms and central microtubules that would allow them to be motile. But, they can move horizontally across a cell surface.


As this movie travels down the photoreceptor, notice the
vertical basal body/axoneme on the left. This is a primary
cilium! The microtubules help move photo pigments up and
down the cilium.
Located in humans on the hair cells the inner ear, kinocilium play a crucial role in both hearing and balance, even though they're gone by the time you hear or need to stand up straight. Their role is regulating the erection of the apparatus that allow hair cells to function.

If hair cell kinocilia are poorly named, then hair cell stereocilia are down right liars. They aren’t cilia at all. The characteristics of cilia include that they are microtubule extensions of a basal body modified from a centriole. They may be motile or nonmotile, but their functions are mediated by moving signaling, structural, or receptor molecules up and down via intraflagellar transport proteins.

None of that applies to sterocilia! They're built from actin not microtubules. They do not have an intraflagellar transport system. They have no basal body. They are very similar to the microvilli of your gut epithelium, but nothing like cilia, except for the fact that they stick up from a cell.

The hair cells work by using the sterocilia as mechanoreceptors. In the cochlea, they bend in response to fluid movement based on vibrations of sound. In the semicircular canals, they bend in response fluid movement as a result of changes in head position. When the sterocilia bend, it generates an action potential in neurons that go to the brain.


Hair cells of the cochlea can be damaged by loud noise.
The left images are the normal (top) hair cell sterocilia, and
the same sterocilia after a loud noise (bottom). The right
images show a series of hair cells in normal condition, and
after a long time exposed to loud noise. Turn down your
music – do you think the hair cells in the damaged cochlea
work well?
So that explains the sterocilia (that aren’t really cilia), but what about the kinocilium? A 2007 paper reviewed how kinocilia mediate production of sterocilia. The hair cells start out with a smooth surface and one long kinocilium in the center of the apical (top) surface. Then the sterocilia start to grow. As the sterocilia appear, the kinocilium moves laterally, to the edge of the apical surface. This defines the orientation of the hair cell – the direction the sterocilia will bend.

The sterocilia start to grow longer, with the ones closest to the kinocilium being the longest. They line up to look like a choir on risers in front of the taller kinocilium. Now they are ready to function. At this point the kinocilium disappears! If you look at working hair cells, you won't find the structure that mediated their development.

So we have two new ciliary structures - neither of which act like cilia. That’s weird enough, but it gets weirder. There is a disease that affects both hearing and vision because it messes with the primary cilia of the retina and the sterocilia of the ear. But we just learned that those are two completely different structures!


People often use "tunnel vision" to explain the field changes
in retinitis pigmentosa, the kind of progressive blindness
in Usher syndrome. But really, it’s more like backing into a
tunnel, one that never reaches the other side. Think of
running this clip backwards.
Called Usher syndrome, victims suffer from hearing loss, vision loss, and balance problems. The vision loss is due to defective maintenance of primary cilia of the retina, but the stereocilia of the cochlea and vestibular system aren’t cilia at all, how could they be affected by a 1˚ cilia protein problem?

As we said last week, nature hates a unitasker. There are at least 11 proteins that work in development and working of both sterocilia AND primary cilia, even though they look and are built completely different. A mutation in one of those proteins affects all three systems. Maybe it would be better if sometimes a protein had just one job, fewer things could get screwed up if something goes wrong with it. Would you rather have reduced vision, reduced hearing, bad balance, or all three?

All this knowledge leaves us with an unanswered question - did the sensory primary cilia develop from motile cilia, or did motile cilia develop from the primary version? Did broken motile cilia develop a new job, or did 1˚ cilia learn how to dance after they had learned their first function? Hmmmm.

We've barely touched the functions of cilia that don’t even move. In the next couple of weeks, we will see how primary cilia keep you from being fat, and how they will be crucial for long-term space travel. Then we can figure out how they give you a right and left hand.




Mathur P, & Yang J (2014). Usher syndrome: Hearing loss, retinal degeneration and associated abnormalities. Biochimica et biophysica acta, 1852 (3), 406-420 PMID: 25481835

Doroquez DB, Berciu C, Anderson JR, Sengupta P, & Nicastro D (2014). A high-resolution morphological and ultrastructural map of anterior sensory cilia and glia in Caenorhabditis elegans. eLife, 3 PMID: 24668170

Patel, A. (2014). The Primary cilium calcium channels and their role in flow sensing Pflügers Archiv - European Journal of Physiology, 467 (1), 157-165 DOI: 10.1007/s00424-014-1516-0

Fry AM, Leaper MJ, & Bayliss R (2014). The primary cilium: guardian of organ development and homeostasis. Organogenesis, 10 (1), 62-8 PMID: 24743231



For more information or classroom activities, see:

Primary cilia –

Hair cells –

Visual photoreceptors –

Usher syndrome -





Wednesday, January 14, 2015

Everybody In The Gene Pool - Plants That Swim

Biology concepts – botany, taxonomy, alternation of generations, cycad, gametophyte, sporophyte, gametes, motility, ginkgo, archegonium, antheridium


In the LOTR The Two Towers we find the tree herders
that can move on their own despite being plants. Today’s
exception is a version of this, if on a much smaller scale.
There are a few types of trees that have motile parts; they
don’t rely on wind, gravity, insects or anything else to
move from one place to another.
Plants are divided up into many categories, and few people agree completely on the groupings. I’ve got a new grouping – swimming plants versus non-swimming plants! It’s as good as anyone else has come up with – let’s investigate the plants that can move on their own.

Plants are most often called by their binomial system names (genus, species), but this is just naming, not categorizing in a large way. Animals, protists, fungi, etc. are all divided into different phyla based on their similarities ad differences. But for some reason (I hope there’s a reason) botany uses divisions instead of phyla.

There are 10-12 divisions of plants (we’ll use 10), covering everything from the mosses to the flowers. Compare that to 21 phyla of animals and it seems like the plants will be easier to classify – but not so fast.

Group plants according to various characteristics and you start to muddy the waters. You might divide them up according to whether they have vascular tissue or not. Non-vascular plants are short because they don’t have vessels to move water very high – these are the Anthocerotophyta (hornworts), the Bryophyta (mosses), and the Marchantiophyta (liverworts). Together they are called the Bryophytes.

The vascular plants are all seven of the other divisions – the Lycopodiophyta (the spikemosses and clubmosses), Pteridophyta (ferns and horsetails), Coniferophyta (conifers), Cycadophyta (cycads), Ginkgophyta (just one species, Ginkgo biloba), the Gnetophyta (a weird group), and Angiospermae (flowering plants).  The conifers, cycads, ginkgo and gnetophytes are often grouped together as the gymnosperms – you’ve probably heard of them.

On the other hand, you might divide the plants up into the seed plants and non-seed plants. In that case, you lump the club mosses and the ferns with the bryophytes, since they all reproduce using spores, not seeds.


Every plant alternates between versions of itself that are
diploid (sporophyte) and haploid (gametophyte). Different
types of plants spend different amounts of time as one or
the other. Mosses and other bryophytes are almost always
in their gametophyte state, while trees are sporophytes with
microgametophytes (antheridium and archegonium) located
in their flowers only.
Lest you think that all those divisions that are seed plants are the same, you can divide them all differently based on whether their seeds are naked (the gymnosperms) or those with fruit (parts of the ovary or accessory organs that overgrow – all in the angiosperms).  Or you could divide them on the basis of how many leaves the embryonic plants have; monocots have one while dicots have two. Angiosperms play by these rules, but gymnosperm seeds don’t, their embryos may have none, one, two, or dozens of cotyledons (embryonic leaves).

Here’s one classification method you may not have heard before – gametophyte dominant vs. sporophyte dominant plants. This has to do with the cycle of life of plants.

Every plant has two lives. Part of its life is spent as a haploid gametophyte (produces haploid gametes) while another plant of the species is a diploid sporophyte.  The sporophyte produces spores that grow into the gametophyte, then the gametophyte produces gametes that join together during fertilization to become a new sporophyte.

Some plant types (like bryophytes) exist mostly in the gametophyte stage and are therefore called gametophyte dominant. Other plants (like trees and flowers) spend all there time as sporophytes and only small parts of them become gametophytes (like pollen or cones).

One way you shouldn’t classify plants is based on their movement. Sure, some plants can grow in a certain direction, toward or away from some stimulus (tropisms, see this post), but plants aren’t motile. They don’t pick up and move themselves from one place to another under their own power.


The Himalayan Balsam is an invasive viny flower that has
become a problem in Europe and is invading the US as well.
Their seed pods contain fins under great strain when fill
with water. The slightest provocation will cause them to
explode, sending seeds more than 25 ft (7.5 m).
Plants also have many ways of moving their seeds and this is sort of a way of plants moving, but I think it’s cheating a bit. Seed dispersal mechanisms can rely on the wind (maples, dandelions) or water (cranberries, coconuts). They can use animals that eat them (many), or just grab ride on them (devil’s claws), or they can burst out (peas) or be shaken out (poppies) and use gravity. But this isn’t really a plant moving by it’s own power.

Plants disperse seeds as new plants, but they also disperse their male gametes in order to find the egg on another plant of their species. You have to get the pollen of seed plants (containing male gametes) or the male gametes themselves to the egg. Like seeds, pollen grains can be moved by insect, by wind, by rain, etc. These are the ways most plants get their male gametes to the egg in order to create a new plant, either in a seed or without a seed.

But there are exceptions, and this is weird exception. Some plants have male gametes that are motile. They swim to the egg! No big deal for animals, they pretty much all have motile male gametes (we’ll look at the exceptions to that), but it’s quite the stunner in plants.


Who knew SpongeBob cartoons were science lesson. Plankton
is green, a phytoplankton – an algae to be precise. Those two
antennae? Probably his two flagella, the way he would swim
around. The feet and the single eye-not so scientific.
Algae are probably the ancestors of all land plants, and we know their gametes have flagella for swimming from our post on them. But some land plants retain this method of male gamete dispersal, but they do include some weird twists. The plants that have motile male gametes cross many of the classes that we described above. There are some seed plants and some spore plants, some vascular and some non-vascular, some are gametophyte dominant and a few are sporophyte dominant – but no flowering plants do this.

Bryophyte males gametes are swimmers. The mosses, liverworts and hornworts  live close to the ground and must have standing water for the make gamete to reach the female gametophyte and egg. The haploid gametophytes are the moss that we usually see. The antheridium grow on the top of the male plants to produce male gametes, while the archegonium on the female plant tip produces the ovule with the egg. When the water is high enough the antheridium releases the male gametes and they swim to the egg using two flagella. The sporophyte (diploid) plant grows from the top of the female gametophyte.

Ferns, horsetails, and club mosses are taller than mosses because they are vascular, but they still require water for their male gametes to swim to the egg. The gametpophyte is a heart shaped leaf that lies near the ground. At one spot the archegonium grows the egg, while the male gametes in the antheridium grow nearby. Water resting on the leaf allows the male gametes to swim across the leaf to the egg (or from leaf to leaf). The sporophyte grows from the heart-shaped gametophyte and is the fern we usually think of.


Cycads (left) are gymnosperms whose trunk are formed from
the bases of the leaves as they grow and are lost. There are
about 300 species of cycads known, with several added every
year. The Ginkgo biloba is the only extant species of the
division. Because its wood is insect resistant, some trees may
be over 2500 years old.
Angiosperms and other seed plants use pollen to send the male gametes to the ovule. When the pollen reaches the archegonium, a tube grows into the ovule and to the egg. The male gamete cells are carried along by the pollen tube right to the front door of the egg. This is when fertilization occurs.  But not all seed plants work this way. A few of the gymnosperms still use a modified version of swimming to the egg.

Cycads (about 300 species) and the lone extant ginkgo, Ginkgo biloba, do have pollen grains that represent the male gametophyte plant. They get blow or carried to the female gametophyte cone and then it gets weird.

The ovule produces a drop of liquid that sticks into the air. The pollen gets caught in this drop and then the drop and the pollen are pulled back into the ovule. The pollen tube grows into the female reproductive organ, but not right to the egg. When the pollen tube reaches the entrance of the archegonium, it ruptures and the gametes are released into a watery fluid that surrounds the eggs.


Cycad and ginkgo male gametes move on their own, the only
exceptions in the seed plants. They have hundreds to thousands
of cilia, as opposed to flagella in bryophyte gametes, which
pull the cell forward. Ginkgo male gametes are huge (0.3 mm),
larger than an entire Wolffia globosa plant.
The male gametes have about a thousand of cilia (not flagella) that pull the cell through the watery environment inside the ovule toward the egg. Fusion and fertilization occurs when the male gametes find the egg – as always. The cycad and ginkgo male gametes swim, but they swim in the indoor pool, not out in the old swimmin’ hole like the bryophytes.

The male gametes of cycads and ferns are very different, from where they swim, to their relative sizes – ginkgo male gametes are HUGE compared to those of ferns, to the use of thousands of cilia as opposed to a couple of flagella.  However, research shows that they are remarkable similar in structure and function.

A 2006 study looked at the proteins involved in gamete movement in ferns and ginkgo. Their results indicated that most of the proteins in both were homologous enough that it suggested a direct descent from bryophyte to gymnosperm, not a case of parallel evolution.


In Guam, there is a neurologic disease that looks a lot like
Alzheimer’s. Research in 2004 found that it was actually
coming from cycad trees. Here’s how it happens. Cyanobacteria
live in the tree roots and put the toxin BMAA into the tree
tissues. Bats eat the fruits and people eat the bats. Than BMAA in
the brain causes disease.
One more cycad exception while we’re here. The cycads can do something that I thought was reserved only for philodendrons and a few relatives. These thermogenic plants can raise the temperature of their male cones by several degrees when the pollen is mature. A 2013 study showed that they can raise the temperature of male cones 2-15 degrees above ambient temperature.

This is believed to attract more insects as pollen distributors, and the researchers did find that more insects visited the plant when the temperature was increased. The mechanism may involve volatilizing more attracting chemicals though the added heat, which would then attract more pollinators (usually weevils).  Pretty advanced for a plant with a so-called primitive reproduction mechanism.

Next week – the base of the undulipodia has a special story all its own. Is it another instance of bacteria evolving into one of our organelles? And it has two very different jobs – which came first?



Suinyuy, T., Donaldson, J., & Johnson, S. (2013). Patterns of odour emission, thermogenesis and pollinator activity in cones of an African cycad: what mechanisms apply? Annals of Botany, 112 (5), 891-902 DOI: 10.1093/aob/mct159

Vaughn, K., & Renzaglia, K. (2006). Structural and immunocytochemical characterization of the Ginkgo biloba L. sperm motility apparatus Protoplasma, 227 (2-4), 165-173 DOI: 10.1007/s00709-005-0141-3

Murch, S., Cox, P., & Banack, S. (2004). A mechanism for slow release of biomagnified cyanobacterial neurotoxins and neurodegenerative disease in Guam Proceedings of the National Academy of Sciences, 101 (33), 12228-12231 DOI: 10.1073/pnas.0404926101


For more information or classroom activities, see:

Alternation of generations –

Seed dispersal –

Pollen –

Cycads –

Ginkgo biloba –