Showing posts with label transpiration. Show all posts
Showing posts with label transpiration. Show all posts

Wednesday, August 24, 2016

Keeping Your “Ion” The Ball – Salts and Life

Biology concepts – salts in biology, osmotic potential, action potential, transpiration


Dietary salt – crucial for survival;
Veruca Salt – not so much.
In Latin, verruca means wart, so Roald
Dahl was probably trying to tell us something
when he wrote her character into Charlie
and the Chocolate Factory.
We have learned that one of the crucial functions of water in living organisms is to help regulate the salt concentration in and between the cells (Gimme Some Dihydromonoxide). But why do living things require salts? We all know that we must have a source of salt (sal in Latin) in our diet or we die; the Romans gave it so much importance that part of a soldiers pay was to be used specifically for buying salt – his salary.  But what are its functions?

Water tends to flow from where salts are in low concentration (high water concentration) to where salts are high concentration (low water concentration). Just like other molecules, water diffuses to where its concentration is lower (It’s All In The Numbers-Sizes in Nature). Osmosis (osmo = push in Greek) is the special name given to the diffusion of water, for every other molecule it is just called diffusion.

Too much salt is destructive to cells and organisms, so water helps control the salt held in the body. On the other hand, too much water is also bad for living things (water toxicity), so salts help to control the water concentration. Together, this ratio of salt and water inside and outside of the cell leads to a controlled imbalance called the osmotic potential of the cell. Every living thing has systems to maintain this osmotic potential within a small range (osmoregulation, we will discuss this in more detail soon).


The osmotic potential is measured in units
of pressure (bars). It is equal to the amount
of water that will move in response to a
difference in solute concentration across
a membrane.
When in water, sodium chloride (NaCl, table salt) dissociates into Na+ and Cl- ions, and it is these ions, along with K+ (potassium ion from KCl) that perform many functions in living organisms. Sodium is 10x more concentrated outside the cell, while potassium is 20x more concentrated inside. The slight difference in the charges of the two ions (and the fact that most Cl- is outside cells) sets up a membrane potential in cells.

An important function of this membrane potential is in the neuron (nerve cell), as rapid reversal of the potential along the cell membrane (through ion specific channels) produces an electrical current that we know as the action potential (neural impulse). It is the rapid change in concentrations of Na+ and K+ cations (positively charged ions) inside and outside of the neurons that sends the messages from our muscles to our brains and back, as well as all the thought processes in our brain.


The action potential of the neuron is not simple.
Sodium is higher outside and potassium is higher inside.
When a signal is received (usually from another neuron),
sodium leaks in and potassium leaks out. The slight
difference in the the charge of each means that the neuron
goes from -70 mV to +40 mV. This depolarization travels
down the neuron’s membrane for the entire cell.
Salt's importance is illustrated when their concentrations get out of whack. Too little salt produces symptoms similar to dehydration, with cramping, nausea and confusion. Too much salt results in hallucinations and insanity. The classic example of too much salt intake is being lost at sea. Not having a supply of freshwater, people may start to drink seawater. The salt concentration is too high; their kidneys can’t get rid of all the excess, and the action potentials in the brain begin to misfire. People will see things that aren’t there, and will make critically bad decisions. Many end up swimming away from relative safety and subsequently drown.

We can get rid of some salt through our skin. Is your dog is happy to see you when licking your face after you arrive home, or does he just want the salt? Athletes will often eat bananas to augment their potassium stores and keep the cramps away after exercising. They should really follow that run with a bowl of lima beans; they have much more potassium.

However, munching on black licorice is alot like running a long distance. Glycyrrhizin is the main glycoside (a sugar bound to a non-carbohydrate) in licorice root and is 20x sweeter than sucrose. Glycyrrhizin prevents potassium reuptake in the kidney, so you end up urinating out most of your potassium stores. You could cramp up due to excessive snacking.

The source of glycyrrhizin’s effect on potassium reuptake has to do with cortisol, a stress hormone. Cortisol is converted to cortisone, but glycyrrhizin inhibits this conversion. The increased cortisol makes it appear like your body has too many salts in the blood, and you adjust. This isn’t just a problem for the people who eat a lot of licorice.

A 2010 study indicates that pregnant women who eat licorice can permanently affect their children’s hormone control in their brains. The hypothalamic-pituitary-adrenocortical axis (HPAA), is a relay that controls the child’s production of cortisol, aldosterone and other hormones. These work to control the osmotic potential of the blood and therefore the blood pressure (as well as other things).

The researchers data shows that maternally ingested licorice inhibits the fetal barrier to maternal cortisol. More cortisol then passes to the fetal blood system, and programs the HPAA to have a higher baseline. From then on, the babies make more cortisol, a stress hormone that puts pressure on the physiology, sodium and potassium levels, and can lead to weight gain. Moms – take care – what you eat does affect your baby.

Na+ and K+ work in muscle function; cramping and paralysis may result from too little or too much salt. Your heart is a muscle, so changes in salt concentration in the cell can cause heart attacks as well. Many a mystery movie has included the injection of potassium chloride to induce a heart attack. Sodium and potassium cations help maintain proper blood pressure, proper acid/base levels, and proper movement of carbon dioxide from the blood to the lungs. There are precious few functions in which these positive ions don’t play a role.


Collagen and elastin help to make your skin and
joints pliable. O.K., maybe not this elastic – this is
the result of Ehlers-Danlos syndrome, which is
often a genetic disease.
When we think of salt, we usually think of table salt (NaCl), but there are more functions for K+ than there are for Na+, and it is present in higher concentrations in the cell. Potassium is important for the formation and crosslinking of collagen and elastin proteins. These connective tissue proteins hold all your tissues together; they keep your skin from tearing when someone pokes you in the arm, and allow your lungs to expand without ripping when you inhale. So K+ is pretty important even when not working with Na+. It is interesting then that potassium is the only major mineral nutrient for which there is not a recommended daily allowance.

Remember that we often take in these salts as NaCl or KCl. Does the Cl- play a role in organism function? – you bet it does. Chloride anion (a negatively charged ion) is used to produce the hydrochloric acid (HCl) that breaks down the food in our stomachs. Chloride also works in the immune system, hypochlorite (the same active molecule as in bleach) in the white blood cells helps to kill infectious agents and activates other immune system molecules. Chloride is required for the uptake of vitamin B12 and iron and helps control your blood pressure; therefore, Cl- isn’t just that other ion that comes in with Na+ or K+ (or Ca2+).

Chloride ion is elemental chlorine that has gained one electron. This doesn’t seem like much of a change, but it is the difference between life and death. Chlorine itself is a yellowish green gas and it can kill you in a matter of seconds. Chlorine really wants that extra electron, and it doesn’t care if it has to rip it from your lung proteins to get it. When you breathe in chlorine, it reacts with the water in your lungs to produce hydrochloric acid that eats away the cells. It will also react with almost any carbon-containing molecule and further destroy the lung tissue. It was suggested during the American Civil War that chlorine gas could be useful, but it wasn’t until World War I that it was used as a weapon.

Chlorine is poisonous, but we use it to disinfect drinking water and pools. When diluted greatly in water, chlorine does not have the strongly deleterious effect on our cells as it does as a gas, but can still react with and kill microorganisms. Chlorination of water began in the Chicago stockyards around 1908, when the decaying meat and gut bacteria were getting into the drinking water and making the residents sick. The bleach used to disinfect surfaces is much the same as the chlorine used to disinfect 75% of the drinking water in the U.S.; it’s just there in lower concentration. Now chlorine is used in pools as well, and you know it is working because your eyes get red and sting.


Did you know that plants had openings in their leaves called
stomata? Turgor pressure caused by the flow ions in and
out of the guard cells makes the stomata open or close. Their
shape changes based on the amount of water in the guard cell.
There are no exceptions to the rules of salt requirements (weird, isn’t it). All living things need to take in Na+, K+, Ca2+, and even Cl-. Plants use potassium and sodium for water balance, especially to bring morphologic changes like the blooming of flowers. These cations, along with chloride, work in the opening and closing of pores in the leaves (stomata) for the uptake of carbon dioxide and the release of oxygen and water during transpiration (Gimme Some Dihydromonoxide), and in the chemical splitting of water during photosynthesis. It seems that other organisms rely on these ions even more than animals.

All bacteria require potassium and sodium for osmotic regulation and cellular activities.
As the concentration of Na+ in a bacteria’s environment goes up, its dependence on Cl- becomes greater. Fungi, protists, and even viruses depend on salts to remain alive, even though viruses are technically not a form of life. Viruses carry nucleic acid, and salts are needed to balance the charges of the DNA or RNA so it can be stuffed into the viral package, a function within the area of molecular biology.
 

Giardia lamblia and other protozoa use salt ions
to control their osmotic potentials and for other
biochemical functions. Giardia can also change
your potassium levels by causing intense diarrhea
after drinking contaminated stream water.
Molecular biology involves replication of DNA, the transcription of DNA to RNA, and the activities of RNA translation to proteins. K+, Cl-, and Na+ are involved in all these areas. In a feedback mechanism, salt ions control the switches that turn on genes that then control the levels of the ions. If one ion is too high, it will turn on the genes that code for proteins which remove that ion from the cell. Isn’t evolution nifty?

Tightly regulating salt concentration in the cell is important for life, and we have to drink water (kangaroo rats excepted) in order to stay alive. These are the peanut butter and jelly of biology and we will start to see how they work together next time.


Räikkönen, K., Seckl, J., Heinonen, K., Pyhälä, R., Feldt, K., Jones, A., Pesonen, A., Phillips, D., Lahti, J., Järvenpää, A., Eriksson, J., Matthews, K., Strandberg, T., & Kajantie, E. (2010). Maternal prenatal licorice consumption alters hypothalamic–pituitary–adrenocortical axis function in children Psychoneuroendocrinology, 35 (10), 1587-1593 DOI: 10.1016/j.psyneuen.2010.04.010

For more information and classroom activities on salts in biology, osmotic potential, action potentials, or chloride ion in biology, see:

Salts in biology –

Osmotic potential –

Action potential –

Chloride in biology -

stomata –
http://www.apsnet.org/edcenter/intropp/topics/Pages/OverviewOfPlantDiseases.aspx

Wednesday, August 10, 2016

Gimme Some Dihydrogen Monoxide


Birds need water just like the rest of us,
but beaks make it harder. They may suck
it up like a straw or scoop it up like a bucket,
or by leaning back and letting the rain fall in.
At some point or another we've all said, “I’m about to die of thirst.” Of course we can only survive for a few short days without water, but do you know why?

Cells are full of salt water (saline), but are also crowded with proteins, carbohydrates and lipids (saline + organic molecules = cytoplasm). This suggests the importance of H2O, but it doesn’t say anything about the reasons behind its importance.

Water is the solvent (the liquid part of a solution), while the proteins and carbohydrates are the solutes (the solids dissolved in the solvent). Lipids (a type of fat) are insoluble in water; therefore, they are good for building cell membranes. They help keep what is in in, and what is out out. With a lipid membrane, our cytoplasm doesn't leak out on to the floor.


Cytoplasm isn’t water plus some organelles. As shown in
this electron micrograph, it is more like a gel, packed
with organelles, proteins, minerals, sugars, and nucleic
acids. There is water, but just enough to separate the other
constituents. Photomicrograph credit: Dr. Jeremy Burgess/Science
Photo Library.
The intracellular solutes are surrounded by water. It’s like the green jello with pineapple that your Aunt brought every Christmas, except that it's packed to the gills with pineapple. Cytoplasm is more crowded than the public pool on a 104˚F day when the ice cream vendors have gone on strike. In some cases, there may only be a few molecules of water separating different cellular components, but this water layer is crucial.

Water is the solvent in which most cellular reactions take place. Water is made up of an acid (H+) and a base (hydroxyl, OH-). Together, they are two hydrogen atoms and one oxygen, H2O! Having the H+ around keeps the bases in check, while the OH- keeps the acids in check. This helps keep the cytoplasmic pH within a small range (buffers it), about 7.35-7.45. Buffering the cytoplasm ensures that that reactions proceed in the proper direction and at the proper rate.

Water transports materials within the cell, from cell to cell, and through the blood and lymph. The partial negative and positive charges, the high surface tension, and the cohesive properties of water make it good at its jobs.


Water being sucked up in a capillary tube
uses cohesion (water sticking to water) and
adhesion (water sticking to the glass tube).
Water likes to bond to itself (cohesion) via hydrogen bonds formed between the positive H+’s of one water molecule and the negative OH-‘s of two others. Cohesion is what makes water form drops as it rains, and what gives water its strong surface tension. Surface tension is why some insects can land on water and take off again. Water striders (family Gerridae), walk on water and you can actually see the depression in the surface, like when you stand on your bed. They are helped out in this endeavor by hydrophobic (water-fearing) tiny hairs on their legs and feet.

Water also likes to hydrogen bond other surfaces; this is called adhesion. If you pour water into a small diameter glass, you can see it cling to the side (meniscus, Greek for crescent), and even seem to rise up the side of the glass (see the image above). If the glass tube is narrow enough, like in a capillary tube, the water will climb up the tube against gravity. The force that drives this is adhesion.


Water striders spread their weight over a large area to
reduce their pressure on the water. They are also helped
by the hydrophobic proteins on their legs. But mostly, the cohesive
force of the water raises the surface tension so the strider
remains on the surface.
The adhesive force is driven by the bipolar (a negative end and a positive end) nature of water, just as with cohesion. The positive H+ is attracted to any negative molecules, and the negative OH- is attracted to anything positive. Together, they are attracted to most everything, not just other water molecules.

Hydrogen bonding and the adhesion and cohesion they produce are important for plants. How does water absorbed by a redwood’s roots get to its leaves way up high? The mechanism has several features, the most important of which is suction. When water in the leaves evaporates, it creates negative pressure that actually pulls the water up from the roots through the plants vessels.

The negative pressure alone isn’t strong enough to keep the water moving against gravity, but when you add in the cohesion of water molecules to one another, and adhesion of the water molecules to the sides of the vessels, it all works out. The sum total of these actions is called transpiration, and is responsible for moving water against gravity in plants.

Water also participates in many cellular reactions, most famously photosynthesis. During the Calvin cycle of photosynthesis (dark reactions) glucose is produced, water is split into hydrogen atoms that are incorporated into the growing carbohydrate and gaseous oxygen (O2) that is released. It is this transformation of water to gas that drives transpiration.  In cellular respiration, when carbohydrates are used to produce chemical energy (ATP), the exact opposite occurs – water is formed from oxygen and hydrogen.

Other cellular reactions, such as the hydrolysis (hydro = water and lyse = split) of fats or proteins are occurring inside cells all the time. In these types of reactions, a water molecule is split into H and OH while the target molecule is also split in two; one part gains a hydrogen and the other gains a hydroxyl group. This is crucial for the normal degradation of cellular proteins by protease enzymes, amongst other things.

If that wasn’t enough, water acts as temperature buffer, helping organisms hold a more constant temperature. Water does not warm up fast and it does not cool down fast; it tends to keep an even temperature. It has a high specific heat (1 calorie/gram C˚), meaning that you must add a lot of energy in order to change its temperature. Water’s high specific heat evens out temperature fluctuations in the body and allows reactions to proceed in a controlled fashion.

Finally, many organisms use water pressure to hold their form, an example of the turgor pressure we learned about several weeks ago (Plants That Don’t Get A Good Night’s Sleep). For instance, you return home from a trip to find your plants have turned brown and are drooping in their pots. Your goldfish are belly up, and the expensive six-pack in your fridge is now a two pack – the neighbor you asked to look after them did a bang up job. If you’re lucky, the plants stand back up a few hours after a good soaking, especially if you fertilize them with your goldfish carcasses. Your plants need the water for everything we have discussed, but also because the water pressure in the cells keeps them the plant stem and leaves standing rigid.


The tube feet of starfish and other eichinoderms have a
suction cup on the end of the podia. The internal portion
is the ampulla, the tube that holds water to regulate the
tube movement.
In a similar fashion, starfish store and move water through a series of hollow tubes to form a hydrostatic skeleton. In the general sense, this type of skeleton is any fluid filled cavity surrounded by muscle, in which the actions of the muscles work against the fluid pressure in the cavity. Worms, and many other invertebrates have this type of support system.

But starfish take the concept a bit further. Not only is water used to maintain the form and structure of the animal; it makes up the water vascular system for locomotion (tube feet), food transport, and respiration. By moving water in and out of specific tubes in the different arms, the muscles contract and extend the tube feet, pushing them against a surface. The movement of water in and out of the tube feet is also the primary way to move oxygen into the tissues of the starfish, and the water pressure can be used to evert their stomach (it will protrude out their mouth and turn inside out) to surround and engulf food. Ugh!


Many types of animals use hydrostatic skeletons, where the pressure of water substitutes for a rigid skeleton. Muscular movements are generated against the in agonist/antagonist form against the pressure of the water, using muscular fibers positioned in several planes. A recent review by William M. Kier demonstrates how the hydrostatic skeletons and muscular arrangements of several different animals work to generate stiffness as well as movement.

For instance, in the tube feet of the starfish, Ludia clathrata, muscular fibers are oriented in longitudinal and circular directions, allowing for extrusion and contraction. But he also discusses the connective tissue fibers that are just as important for the limiting of movement and generation of tension.

We always knew water was crucial for life, and now we know why. Its importance is reinforced when you consider how much water there is in different organisms. Humans are about 60% water by mass, but it varies from person to person. Younger children are normally have a slightly higher percentage of water, maybe 70%, while morbidly obese people have much less water, remember that fat is stored in the absence of water (Is it Hot in Here or is it Just My Philodendron?).


The golden barrel cactus has ribs that can expand and
contract, depending on the hydration state of the plant.
It is also called a mother-in-law’s cushion….that’s just mean.
Plants require even more water. Cactuses can be more than 90% water after a good rainfall. The places where cacti grow have variable water availability, so when water is present, they must take advantage. The endangered golden barrel cactus has ribs that can expand to take in more water. In addition, the golden barrel cactus is round to reduce surface area and has a thick waxy surface, both of which reduce water loss.

Despite these dehydration prevention measures, cacti still lose water over time, and it might not be replaced for a long time. Therefore, cacti have evolved mechanisms to withstand the loss of almost 60% of their water without any negative ramifications. In this area, they are the exception. Typical flowers and trees can only withstand a 20% water loss without damage; however, this is still much better than humans can do.

No matter what your personal water percentage might be, you can only afford to lose about 5% of your water without suffering symptoms. At mild levels of dehydration (5%), you may feel groggy or get a headache. Higher levels of water loss will bring tingling in the muscles, nausea, and confusion. If the loss reaches 10-15%, there can be muscle spasms, delirium, and the kidneys may be permanently damaged (if water loss is held for a sufficient period). Held above 15%, dehydration is usually fatal. However, athletes can lose up to 30% of their body water in the short term, but it must be replenished immediately so that performance or normal function will not be compromised.

When we say normal function, we mean those functions of water we have mentioned, but also several others we haven’t. Water, along with surfactant proteins, works to keep our lungs absorbing oxygen. Water lubricates our joints and tissues to avoid friction damage. People with xerostomia (Greek, xero = dry and stoma = mouth) or xerophthalmia (dry eyes) use artificial saliva or tears to prevent damage to mucous membranes. Finally, water acts as a cushion, absorbing pressure and force to protect our organs from traumatic damage, like a punch to the gut.

Damage can come in many forms when water is low, so all living organisms require water intake to function and remain safe, right?……Or is just most organisms? Next time.


Kier, W. (2012). The diversity of hydrostatic skeletons Journal of Experimental Biology, 215 (8), 1247-1257 DOI: 10.1242/jeb.056549


For more information, classroom activities, or laboratories about water in biology, the properties of water, transpiration, or the Calvin cycle, see:

Water in biology –

properties of water –

transpiration –

calvin cycle –
http://www.educationalrap.com/song/photosynthesis.html

Wednesday, March 23, 2016

Leaves Suck!

We have talked about the reactions of photosynthesis
before. Basically, the plant uses the energy of the sun to
fix carbon (change it from gas to solid) by adding water
to it chemically. Then it splits them again to make energy.
In previous posts we have talked about photosynthesis – carbohydrates and made from carbon (carbo-) with water added (-hydrate, as in- when you are very thirsty, you are dehydrated). Therefore, the leaves must have a constant and reliable source of carbon (from carbon dioxide in the air) and water.

Question of the day:
How do trees move the water up into their leaves, against the force of gravity, in order to carry out photosynthesis?

Water is quite massive (1kg/L or 8.3 pounds/gallon), and a mature oak tree needs 40-60 gallons of water every day. So how does this huge amount of water get to the top of the tree? Does it travel there from someplace else? Could it be absorbed by the leaf from the air in the same way carbon dioxide is brought in? Or maybe plants don’t have to drink and they use the water they make during metabolism, like the kangaroo rat we talked about last year -they don’t drink at all and seem to get along just fine.

We might be able to eliminate one possible explanation right away – what happens when you don’t water your houseplants? Do they grow or do they die? So do you think most plants need a source of external water or could get along on the water they make during aerobic respiration? Right… I think we are down to absorption or movement from some other place on the plant, namely the roots.

Keep in mind that not every plant has to move water from its roots to its leaves, take the bromeliads for instance. Many of these plants don’t have roots, we have discussed how they have special structures that help them absorb water at the base of their leaves.

You could test other types of plants to see if water on just the leaves is enough to keep them alive. How might you do that? Cover the dirt with something that repels water and then just mist the leaves – that might do it. Try it for a while and see how the plants do.

I think that you will find that they do not thrive after the moisture in the dirt is used up. For most plants, 99% or more of the water they use must be absorbed by the roots and transported up the stem (trunk if it is a tree) to the leaves.

Celery stalks and carnations are good to show the flow
of water against gravity. Dark colors show up better.
Maybe you could have races between the two plants and
then cut them crosswise to look at the size of the vessels.
I bet the smaller ones move water faster.
To model the answer to our question of the day all you need is a straw. But that isn’t very illustrative or fancy – so how about cut carnation stems or celery stalks (with the leaves) in a glass of colored water. Lighter colored flowers and darker colored water works best (I use blue food coloring), but I have had students who have really gotten into this and tried to measure the time by adding one color, then switching to another and seeing how long it takes the color to change in the flower and if all the color is lost along with the water.

Over a couple of days, the color will indeed be drawn into the petals of the flower. How does the color get there? Is the water level the same? Water is moving up and taking dye with it. So you can see that it does happen – but this still doesn’t explain HOW it happens. Hint - it isn't capillary action. Even in a very thin capillary tube, water will only move up a few centimeters. How could it possible move from the roots to the top of a redwood tree?

To answer this, you might ask what happens to the water that is being drawn up into the leaves (and flowers of the carnation model). Try putting a baggie over the end of a tree branch and tying it tight.  You will see condensation develop over a day or so. Where did this water come from?

Here are the vessels in a tree. 1) pith – it gets crushed as the tree grows 
2&3) annual growth rings made of water carrying xylem. Why 
do you see different rings if they are all xylem? Because spring 
xylem vessels are big, and summer xylem (less water available, so
less growth) vessels are smaller. The line is the change from 
small to big. 6) phloem – this is what carries the carbohydrate to 
the roots and other parts of the tree.
The answer is a process called transpiration (or evapotranspiration). The water evaporates from the leaves, out of pores called stomates, and this creates a negative pressure – like the negative pressure in your mouth when you suck on a straw. This negative pressure actually pulls water up from the roots through the xylem of the plant, to the leaves. In the case of the carnation flower or celery, it also pulled up the very small dye molecules in the water. This evaporative force is quite strong, but not strong enough on its own to lift that 350-500 lb.s (40-60 gallons) needed for an oak tree each day.

The water itself helps in the process. Water is a social molecule, it likes to stick to itself and to other things. It will climb up the sides of container, just look at the meniscus formed in a narrow graduated cylinder when water is added, or note how water travels up a thin capillary tube.

The capillary action comes from the water’s cohesive force, and helps the tree stay hydrated. Evapotranspiration’s negative pressure pulling water up is combined with water’s ability to climb up, and together this is enough to keep the tree’s leaves in the pink, no matter how tall it grows.

But like everything else, there are exceptions, like the plants that don’t have xylem. The non-vascular plants (like mosses and hornworts) only survive based on water absorption and capillary movement from cell to cell. Therefore, they cannot be very tall; you need vessels (xylem) to allow water movement and tall growth. The tallest of the non-vascular plants, the Polytrichum mosses, may get to be two feet tall, but that’s it.

Evapotranspiration via vasculature and leaf stomates leads to another question – if water is being lost through the leaves all the time, doesn’t this hurt the plant in times of drought. Well… yes. But plants have evolved some pretty neat tricks to help out.

Some plants don’t use the most forward strategy of
photosynthesis because it would drain them of all their
water during the hottest weather. CAM plants can close
their stomates during the day and only fix carbon dioxide
at night when it is cooler. We should probably talk about
these plants in more detail later this year, they have some
mighty cool adaptations.
1) Stomates can open and close to regulate water loss. Some plants can close their stomata completely during the hot day, and save their built up radiate energy to convert carbon dioxide and water into carbohydrates only at night, when they will lose less water. Cacti are a good example of this.

2) Leaves, especially the sun-exposed sides of leaves, are covered with a waxy substance called cuticle that greatly reduces the loss of water by diffusion through the cell wall. If water were allowed to travel through the cell membrane and wall, then it would evaporate and set up a negative osmotic and evaporative pressure that would quickly dehydrate every surface cell.

3) Here's a trick many people don’t really consider – many plants have two types of leaves! You might be able to find a tree or two with which to investigate this.

Big leaves have large surface area, so more water will be lost as compared to smaller leaves. Leaves in the direct sunlight should be structured in order to carry out the most photosynthesis, but if they are small, how can this be maximized?

Many trees have sun leaves and shade leaves. Sun leaves are smaller, thicker, have more stomata, and are located where the direct sunlight hits the tree during a good portion of the day.  Shade leaves are bigger, thinner, and have fewer stomates to reduce water loss.

Sun leaves have more layers of pallisade cells, the cells that have the most chlorophyll and do most of the photosynthesis. They are located at the ends of branches, especially on the north side, and on the crown (top) of the tree.

Sun leaves are a smaller and thicker, and they often have
fewer in and outs in their shapes. The smaller shape
reduces water loss, the thicker body provides extra layers
of cells for photosynthesis, the reduced number of cuts
and points…. I have no idea. It is a continuum, leaves that
get a good amount of light land somewhere in the middle.
Shade leaves have to rely on lower levels of sunlight (they are in the shade), so they have even higher concentrations of chlorophyll than sun leaves, although they are thinner. They can process light more efficiently than sun leaves, so they are actually very important to the plant despite their little time in the sun.

Look at the trees around you, do some have large leave on inner branches and lower on the canopy, while having smaller leaves on top or on the ends? These are probably shade tolerant trees. They have developed the ability to still do enough photosynthesis despite low levels of light.

On the other hand, do you see a tree that has just one size of leaf (not including newly formed leaves) and only has leaves on the ends of the branches? This is probably a shade intolerant tree.

The conifers are an interesting exception, some are shade tolerant, usually the firs, while others are shade intolerant, mostly the pines. However, neither type has sun leaves and shade leaves. Their shade tolerance has more to do with their branch geometry and ability to allow just about all their leaves (needles) see the same amount of sunlight.

Next  week, we will ask if there is any limit to interspecies mating, can you cross a cat with a dog? 



von Caemmerer, S., & Baker, N. (2006). The Biology of Transpiration. From Guard Cells to Globe PLANT PHYSIOLOGY, 143 (1), 3-3 DOI: 10.1104/pp.104.900213

Terashima, I. (2005). Irradiance and phenotype: comparative eco-development of sun and shade leaves in relation to photosynthetic CO2 diffusion Journal of Experimental Botany, 57 (2), 343-354 DOI: 10.1093/jxb/erj014

Wednesday, May 8, 2013

It’s An Airtight Case

Biology concepts – respiration, aerobe, anaerobe, CAM plants, plastron respiration, cutaneous respiration

Question of the Day – what living thing can hold its breath the longest?

It may seem like an exaggeration, but people whose
tissues are low on oxygen (hypoxic) can have a bluish
hue (cyanosis). Blood that is oxygenated is redder
than blood that is deoxygenated. In animals with more
hemoglobin than humans, like whales, the blood can
actually turn almost purple. Blue Man Group will turn
you blue - from laughter, not disease.
The world’s record for holding one’s breath (voluntarily) was set in May, 2012 by Denmark’s Stig Severinsen. Even though it wasn’t technically cheating, he did hyperventilate with almost pure oxygen for 19 minutes before he then held his breath for an amazing 22 minutes and 0 seconds!

Hyperventilation works by reducing the CO2:O2 ratio in your blood. CO2 concentration is measured by sensors in your large blood vessels. Signals are sent to the brain to increase the breathing rate if there is too much CO2 in the blood or to reduce the breathing rate if the pCO2 is too low. By breathing fast and breathing pure O2, there will be less CO2 in the blood and your brain will tell you to stop breathing until the pCO2 increases to normal levels.

Stig said he used two mental tricks to increase the time he can hold his breath. One is scientifically valid; biofeedback allows Stig to slow his own body activity. By concentrating on his heartbeat, Stig has learned to stimulate neural pathways to reduce his cardiac output and his overall metabolism rate -lower metabolism and heart rate - less need for oxygen. His second technique? He thinks about dolphins.

Twenty-two minutes seems like a long time; indeed, this feat required arduous training by Stig. In truth, 22 minutes isn’t very long at all. In fact, humans are weenies when it comes to going without oxygen. Lots of animals can hold their breath longer than we can.

Sperm whales and elephant seals are the banner carriers for the marine mammals in our contest. Sperm whales can submerge for more than two hours, while elephant seals may stay under water for an hour or more. Being mammals, they have physiology very similar to humans in some respects, but they do have modifications that allow for the long submersions.

Elephant seals have a large proboscis; hence the
elephant name. There are two species, Northern and
Southern, with the Southern species being slightly
larger. Males can weigh over 5 tons and they fight for
females. The females are more like 1500-2000 pounds,
making this the largest relative difference in weights
of two sexes for any mammal.
Whales and seals have more blood than humans do – duh! Even compared pound for pound, they have 3x as much blood. More blood means more oxygen carrying capability. They also have increased oxygen carrying proteins in their blood and tissues. In addition, they can reduce their metabolism in all but the most necessary organs, and they can divert their blood to just these organs.

New research shows that marine mammals also have oxygen carrying proteins in their brains, called neuroglobin and cytoglobin. So, while blood levels of oxygen may plummet when diving, the brain remains oxygenated.

Sea turtles and crocodilians are examples of reptiles that can hold their breath for amazing lengths of time. Aligators and crocodiles can stay submerged for a couple of hours, while a Galapagos sea turtle can easily stay underwater for 4-7 hours, depending on its level of activity. Maybe they think about Stig in order to stay submerged longer.

Sea turtle hibernation is controversial, but some freshwater turtles do just that. They can stay submerged for weeks or perhaps months at a time! But many turtles cheat at our contest, they have a bimodal respiratory system, through their lungs and through their skin. Cutaneous gas exchange is apparent in all freshwater turtles to some degree, but it is much more efficient in some soft shell turtles, according to a 2001 study.

Let’s look at a different type of reptile. The Belcher’s sea snake (Hydrophis belcheri) is the most venomous snake on the face of the Earth, or under it, as the case may be. It is a sea snake that can remain submerged for 7-8 hours. Sea snakes like H. belcheri have a single lung that runs almost the entire length of their body, and their trachea can also transfer oxygen to the blood. This reduces the “dead space” in their respiratory system and allows them to absorb more of the oxygen they inhale.

This diagram gives you an idea of how little respiratory
space humans use for gas exchange. The only places
that move oxygen in to the blood are the pinkish
alveoli at the ends of each airway. Sea snakes use
their available respiratory space to exchange gasses.
Humans, as a comparison, only absorb about 15% of the oxygen in each breath, partly because the gas exchange takes place only in the alveoli (terminal air sacs). Oxygen in the nose, pharynx, trachea, bronchi, and bronchioles is just exhaled without any chance to be used by the body.

However, sea snakes are cheaters as well. Their bodies have been streamlined to help them move through the water. One adaptation in this direction is the complete loss of scales. As a result, these snakes have evolved the ability to exchange some oxygen and carbon dioxide with the water through their skin. So they aren’t really holding their breath when submerged.

Almost all amphibians are cutaneous (skin surface) breathers as well. In air, most amphibians can survive exclusively by exchanging gasses through their skin, and in water, adult gills or rudimentary lungs are supplemented by exchange of gas from the water. Cold water and turbulent water contains more oxygen, so in these environments amphibians can survive indefinitely by garnering oxygen from water.

Indeed, the largest family of salamanders (the plethodontidae), don’t have any lungs at all. They exchange gasses only through their skin and the mucosa surfaces of their mouths. And many of these salamanders are primarily aquatic, they don’t take a breath in their entire lives – but they aren’t holding their breath either.

But none of these animals are the champion breath holders. There are organisms that laugh at holding their breath for a couple of hours. But let’s limit our discussion to those organisms that require oxygen. It’s no fun watching an anaerobic bacterium hold its breath; it doesn’t need oxygen! In many cases, air kills them!

Cockroaches, ticks, and ants do last a long time underwater, just try flushing one. But they can’t win our contest either. They seem to trap a bubble of air as they submerge. They have long hairs on their abdomens that trap air via the surface the surface tension and cohesion of water.
A plastron is the bottom portion of the turtle or tortoise shell,
made up of flat pieces. On the right is the plastron of a tick.
In some ticks there can be gas exchange from water to bug
through the plastron. This is called plastron respiration.

Surrounded by the bubble, they can oygenate their tissues via the breathing holes on the sides of their bodies (spiracles). This allows them to be underwater for nearly an hour and still be breathing. New research in ticks shows that the plastron (flat portion under the abdomen) is capable of some gas exchange itself via the air trapped by the hydrophobic hairs on the abdomen.

We make a big deal about how plants take in carbon dioxide and give off oxygen, and they do during photosynthesis in their chloroplasts. But that’s only half the story. They also have mitochondria that produce ATP from photosynthesis products via oxidative phosphorylation, just like we do.

For plants that grow in hot, dry environments, loss of water is a serious threat. To minimize water loss, some can close the pores in their leaves (stomata), but this also prevents gas exchange, including taking up carbon dioxide and oxygen. The stomata will open only at night, when the temperatures are cooler and water loss would be lost. This is the only time they exchange CO2 and O2 with the environment as well.

CAM (crassulacean acid metabolism) plants can store the carbon dioxide they take in at night in the form of malate. They then can perform photosynthesis even though their stomata are closed. CAM physiology also reduces the amount of O2 bound by RuBisCo enzyme instead of CO2. RuBisCo + O2 leads to inefficient carbon fixation, so waiting until night time when CO2 is relatively more abundant and more soluble will increase photosynthesis productivity. As a result, CAM plants hold their breath for 8-15 hours every day!

CAM plants close their stomata during the hot day, but
exchange gasses during the cooler night. They convert
carbon dioxide to malate as a temporary fixation, which
they store in the central vacuole. During the day, they
convert the malate to carbon dioxide and then to
carbohydrate in the chloroplast using normal
photosynthesis pathways. CAM plants include the
prickly pear, as shown on the extreme right and left.
But the winners of our lack of oxygen survival contest – bacteria, of course! Bacteria come in many flavors, including those that don’t need oxygen for respiration (chemosynthesizers and anaerobes), those that can take or leave oxygen (facultative bacteria), and those that must have oxygen in order to make ATP (obligate aerobes).

Mycobacterium tuberculosis is an example of an obligate aerobe. I talked to Martin Gengenbacher at the Max Planck Institute in Berlin about M. tuberculosis and its survival time without oxygen. He has recently published a great review of M.tuberculosis biology. In a series of experiments that resulted in the development of something called the Wayne model, M. tuberculosis was sealed in a vessel in which they consumed all the available oxygen over time.

However, even after the oxygen was gone, the organisms remained viable for 25 days! They do seem to go dormant, but this dormancy is not the same as ceasing activity completely. It seems that some metabolism and respiration is maintained in the complete absence of oxygen – even though we know that M. tuberculosis absolutely requires oxygen to survive.

These 25 days make M. tuberculosis better than any of our other example organisms at living without gas exchange, though there may be other obligate aerobes that can perform similar feats. But there’s more to the skills of the tuberculin bacterium. In tuberculosis, the body has a difficult time killing off the organism, so it does the next best thing – it walls off the bacteria and traps them in a prison cell of immune cells. These whirls of cells are called granulomas and are very complex structures.

On the left shows a tuberculin granuloma forming and breaking
down. You can see in the middle a formed granuloma, with
macrophages surrounded by a fibrous cuff and lymphocytes.
When immunosuppression sets in, the granuloma breaks down
and the organisms is released to cause disease. On the right is a
photomicrograph of granulomas. In the right corner is a
tuberculosis bacterium before granuloma formation.
Granulomas are extremely hypoxic (oxygen poor), and M. tuberculosis does undergo dormancy in these structures. But again, Dr. Gengenbacher states that this is a metabolically active dormancy, which would by definition require ATP, and therefore require cellular respiration.

The patient still has TB, but no symptomology. This remains the case until the patient undergoes some form of immunosuppression, some disease or condition that prevents the immune cells from keeping the organism in prison. There have been cases where TB has reactivated some 50 years after the original infection. So – M. tuberculosis can hold its breath for half a century! We have a winner.

Next week, another question to ponder. Just how many species call Earth home? 



Gengenbacher, M., & Kaufmann, S. (2012). Mycobacterium tuberculosis: success through dormancy FEMS Microbiology Reviews, 36 (3), 514-532 DOI: 10.1111/j.1574-6976.2012.00331.x  

Fielden, L., Knolhoff, L., Villarreal, S., & Ryan, P. (2011). Underwater survival in the dog tick Dermacentor variabilis (Acari:Ixodidae) Journal of Insect Physiology, 57 (1), 21-26 DOI: 10.1016/j.jinsphys.2010.08.009  

Williams, T., Zavanelli, M., Miller, M., Goldbeck, R., Morledge, M., Casper, D., Pabst, D., McLellan, W., Cantin, L., & Kliger, D. (2008). Running, swimming and diving modifies neuroprotecting globins in the mammalian brain Proceedings of the Royal Society B: Biological Sciences, 275 (1636), 751-758 DOI: 10.1098/rspb.2007.1484