Showing posts with label animal. Show all posts
Showing posts with label animal. Show all posts

Thursday, January 4, 2018

Every Day Should Be Mother’s Day

Biology concepts – inheritance patterns, mitochondria, fertilization, lineage, mitochondrial Eve

What do the “The Battle Hymn of the Republic”, Mother’s Day, and all your mitochondria all have in common?

Julia Ward Howe wrote the words for The
Battle Hymn of the Republic after meeting
Abraham Lincoln. She wrote it as a poem,
but also as new lyrics for the existing song
called, John Brown’s Body. I wonder if she
had copyright issues to deal with.
The first two are easy; Julia Ward Howe wrote the Battle Hymn of the Republic as a Union anthem during the Civil War, but just 12 years later proposed a national day of mourning and protest for mother’s of sons who killed sons of other mother’s. She had come to regret her support of the Civil War and wanted July 4th to be converted into a protest day by mother’s to ban future wars.

This didn’t go over that well, but the daughter of one of her followers, Julia M. Jarvis, re-purposed the proclamation to celebrate her own mother’s dedication to church and community. This caught on, and in 1912 Jarvis’ home state of West Virginia officially recognized Mother’s Day. Two years later, President Woodrow Wilson declared that the second Sunday in May should be a national observance of a Mother’s Day.

But what has it got to do with your mitochondria? Well, you owe your mom a debt of gratitude for every one of your mitochondria. All of yours came from hers – Dad played no role in your cellular ATP factories.

Here's how it works. Your somatic cells (all your cells except the eggs or sperm) have two copies of each chromosome, but we know that your chromosomes aren’t the only DNA in your cells. Your mitochondria have their own chromosome; it’s circular like the prokaryotic ancestor it came from during endosymbiosis. How do you inherit that DNA?

In this electron micrograph of the sperm you
can see the dark nucleus which houses the
chromosomal DNA. Above the acrosome, or
head, you can see the mitochondria packed
into around the tail proteins. Their ATP is
used to whip the tail for locomotion.
The egg has loads of mitochondria, about a million in each oocyte (egg cell). On the other hand, each sperm has only about 100. This makes sense, the body must produce billions of sperm, but only a few eggs, so it has to ration the mitochondria to all those sperm cells.

The important issue is where the mitochondria are located. The oocyte mitochondria are inside the egg, waiting for a single sperm to enter and begin the process of making a new human (for example). All the mitochondria of the sperm are located in the first part of the tail, called the midpiece or mitochondrial sheath. This also makes sense, as it is the tail’s movement that propels the sperm toward the egg, All of this tail wagging requires a great amount of ATP.

The sperm meets the egg and fuses with the oocyte membrane, but not all of it enters the egg cell. Only the head, or acrosome makes entrance; it has the haploid chromosomal DNA that is your father’s contribution to your genetic makeup. The sperm midpiece, will all its mitochondria remain on the outside of the egg and does not contribute to you being you.

That is how it came to be that you got all your mitochondria from your mother! We all did. The process is called maternal inheritance of mtDNA, and it is has implications for tracking the history of human life.

A journal cover for the issue dedicated to DNA
repair enzymes. Who says scientists don’t have
a sense of humor? Actually, this may just have been
how one guy showed up to the lab that day; his
mind was on science, not fashion.

Mitochondrial DNA doesn’t change much over time, but it does change. Every time your DNA replicates, mistakes are made. “To err is mammalian,” and your DNA polymerase (polymer = long chain, and ase = enzyme that makes) is mammalian. Consider that the DNA polymerase is adding nucleotides to a growing chain at a rate of about 1000/second – some mistakes are bound to occur.

Most of these mistakes are caught and fixed by a series of proofreading and mismatch repair functions, but some mistakes get through. These random mutations often have no effect on the function of the gene product, but if they aren’t fixed, they become permanent and are passed on the next time the DNA is replicated.

Over time, the changes add up. The 50th generation mtDNA necessarily looks different from the 1st generation DNA. Mutations that hurt the function could very well prevent reproductive success (the ability to mate and produce viable offspring), so the changes that we see over time usually are the ones that have little effect on function.

This random mutation wouldn’t matter much if you got half your mitochondria from Pop and half from Mom, there would be random passing on of mitochondrial DNA and probably some recombination, so  the 50th generation wouldn’t look much at all like the first. But you get all of your mitochondria from Ma, and she got hers from her ma, and she got hers from her ma, ….. so that there is a straight line back in your family history.
 
The rate of mutation and the pattern of mutation
in the mtDNA can not only help us date mtEve, but
can help track the migration of humans out of Africa
and around the world. The numbers with a k =
thousands of years ago.
The maternal inheritance of mtDNA allows scientists to trace family lineage through molecular biology (to balance the sexes, you can trace paternal lineage through the Y sex chromosome as well). In fact, with a large enough sample size, you could literally see that all humans are related! Trace the changes in mtDNA backwards far enough and they will all converge on a single female; the mother of all mothers - “Mitochondrial Eve.” This isn’t the same as a Biblical Eve – just the last female to whom we are all related. We don’t know who mtEve was, where mtEve was, or when mtEve was because we don’t have enough samples from enough generations.

The most current estimate is that mtEve lived about 200,000 years ago, although the timing is just that, an estimate. The sampling and math are dependent on knowing the rate of mutation of the hypervariable regions (part of the mtDNA that mutates faster than the other parts) and knowing that this rate has been constant and predictable. Does that sound like the biology you know? The assumption doesn’t invalidate the idea of mtEve, it just makes sending her birthday card difficult.

Even if we don’t know who Eve was, we can talk about her “daughters.” These are the unnamed females to whom we can trace back large numbers of living and deceased humans. Geneticist Bryan Sykes wrote a book called The Seven Daughters of Eve in 2001, but we now consider that we have really defined about 10-12 daughters. With twelve daughters, there must have terrible fights over bathroom time!

Bryan Sykes named his seven daughters of Eve
based on the first letter of the haplotype designation
each already had. Example, haplotype U became
Ursala – he must have seen Bond girl Ursula Andress
in Dr. No recently.

Why would maternal inheritance of mtDNA be a good idea? Current theories hypothesize that this a mechanism by which only genetically strong sperm will reach the egg, and only genetically strong mitochondria will be inherited. With only a few mitochondria in the sperm, they must perform well in order for the sperm to reach the egg. If genetic mistakes have been made during meiotic production of sperm, then chromosomal errors might be accompanied by mitochondrial errors. A fast swimmer indicates a genome without harmful mutations. So the strongest genes get to the egg.

On the other hand, the effort to reach the egg means lots of ATP production, which also means lots of oxygen produced by oxidative phosphorylation. Oxygen can be damaging; the mitochondria probably aren’t in good shape at the end of the race. The sperm may be like salmon. The strongest make it up stream, but they end up so broken down that one trip is all they get; the damage would prevent the next round of their sperm from being prime material.

Why would evolution choose to pass on damaged paternal mitochondria when you have perfectly fine maternal mitochondria laying around in the hundreds of thousands. The chances are greater that the mother’s mitochondria are normal at this point, so the paternal versions are denied entry. Makes sense.

But some organisms just have to rock the boat. Blue mussels (family Mytilidae) and some freshwater mussels have two different types of mtDNA, called F and M – how original. The female passes on the F type to her sons and daughters, while the males pass on the M type to just their sons. Called doubly uniparental inheritance (DUI), females are homoplasmic (one type and males are heteroplasmic (two types).

Males are usually F type dominant in their somatic cells, but M type dominant in their spermatozoa. The females must be F type dominant in all cells, since they only have one type. The interesting part is that both male and female embryos get M type mtDNA, but in those destined to be females, the M type are degraded within 24 hours.

A 2009 study shows that the sex determination and inheritance of the male mtDNA are not coupled, and the female has complete control over whether the male type will be inherited and maintained. But there are occurrences of females with some M type, and males with only F type. Therefore, maternal inheritance is more stringent than DUI ------  Or is it?

This is a Schistosoma mansoni egg. It looks
like a cartoon bubble; I keep expecting it to
say something. S. mansoni is an exception
for trematodes, it has two sexes (is dioecious),
whereas most others are hermaphroditic.
The function of the spine on the egg is not known,
but it may help the egg stick to the wall of the blood
vessel in the host.
In some cases, like honeybees, mice, and a parasitic worm called Schistosoma mansoni, there can be “leakage” of paternal mtDNA into the fertilized egg. Even in some mammalian species other than humans, including sheep and mice, the tail of the sperm can penetrate the oocyte. This gives a zygote with many copies of female mtDNA and a few copies of paternal mtDNA. For some reason – I assume there is a reason, although I don’t know it -- this occurs more in crossbreeding (interspecific breeding – between species), than when two animals of the same species are bred.

In the breeding of animals of the same species, if there is paternal mtDNA present, it is degraded in the fertilized egg. Near the time of birth, they might have only a trace of paternal mtDNA left, but the mechanism by which this occurs is not known. During this time, there is the small chance that male mtDNA could recombine with female mtDNA and gum up the workings of strict maternal inheritance. In any case, there has been only one documented case of a paternal mitochondrion in a child, and this case was clouded by issues of infertility. Does this child feel disconnected from his great, great, great, great grandmother?

So much for animals - how about plant inheritance of chloroplasts and mitochondria? Do they follow the same rules – let’s find out next time.

Ellen L. Kenchington, Lorraine Hamilton, Andrew Cogswell1, Eleftherios Zouros (2009). Paternal mtDNA and Maleness Are Co-Inherited but Not Causally Linked in Mytilid Mussels PLoS One DOI: 10.1371/journal.pone.0006976

For more information or classroom activities on maternal inheritance, mitochondrial Eve, or fertilization, see –

Maternal inheritance –

Mitochondrial Eve –

Fertilization -

Thursday, December 7, 2017

Many Paths To The Top Of The Mountain

Biology concepts – hydrogenosome, FeS cluster protein, loricifera, erythrocyte


More than one way to skin a cat seems to
be a newer version of the old British saying,
“there are more ways to kill a cat than by
choking it with cream.” Mark Twain was one
of the first to use the cat skinning version, in his
classic A Connecticut Yankee in King Arthur’s
Court.
The old Chinese proverb says, “There are many paths to the top of the mountain, but the view is always the same.” Put somewhat less delicately, “There’s more than one way to skin a cat.” Who wants to skin a cat? I think there is something to be said for the wisdom gained in 4000 years of culture, to say nothing of the ability to say it better.

In biology, this is particularly relevant; organisms have found different ways to do the same things, and different ways to do different things, but the end goal is always the same – live long enough to reproduce and the more offspring the better.

Last week we talked about how some organisms have degraded their mitochondria into mitosomes, and how they get along fine just using glycolysis and fermentation for energy (and maybe some arginine dihydrolase action). But there is another mitochondrial remnant in some other species of anaerobic eukaryotes called the hydrogenosome, and it works more like a mitochondrion than does the mitosome.


Here is the T. vaginalis protist. The blue probe
binds to DNA (just one nucleus for this guy) and
the yellow probe binds to a hydrogenosome
protein. The strands at the top are the flagella it
uses to move, not its hair.

Trichonomas vaginalis is a eukaryotic amitochondriate, and therefore is an anaerobic (without oxygen) protozoan. Unlike many protozoans, T. vaginalis does not have an environmentally resistant form (something that can live outside the host for a prolonged time – often called a cyst). It is transmitted directly from host to host, in this case sexually. Trichomoniasis is the most common curable sexually transmitted disease, but 70% of cases have no symptoms (asymptomatic). This is unfortunate because T. vaginalis infection can predispose to HIV infection and even cervical cancer. Having symptoms initially might prevent some of the later tragedies.

Unlike the mitosome containing protists, T. vaginalis does use its mitochondrial remnant (hydrogenosome) to make ATP. The hydrogenosome was discovered much earlier than the mitosome, although they have the same origin and general morphology. Because of this difference in timing, amitochondrial organisms with hydrogenosomes are called type II amitochondriates. Type I’s were the organisms that presumably didn’t have any mitochondrial-like organelle (and were seen first), like the Giardia and E. histolytica that we now know have mitosomes.

Pyruvate generated by glycolysis enters the hydrogenosomes just like it does in mitochondria. The Krebs cycle would be next for aerobic organisms, but in the hydrogenosome, iron-containing enzymes convert the pyruvate into an intermediate that has CoA (coenzyme A) bound to it. When this CoA is removed, energy is released, and this energy is used to convert ADP to ATP.

Because ATP production occurs at the level of substrate (a molecule being chemically changed, in this case by an enzyme), it is called substrate level phosphorylation. This is in contrast to the use of oxygen and the electron transport chain of proteins to produce ATP through the proton gradient (oxidative phosphorylation). One of the byproducts of the pathway is hydrogen, hence the name of the organelle.

In terms of energy production, the pyruvate:ferredoxin oxido-reductase (the iron/sulfate-containing enzyme in hydrogenosomes, often abbreviated as FeS cluster enzymes) pathway is about as efficient as the arginine dihydrolase pathway (ADH) in some mitosome-containing organisms. However, T. vaginalis also contains the ADH pathway, so it comes out ahead of Giardia in terms of energy production.

While the hydrogenosome has some activity in energy production via the FeS-protein mediated metabolism of pyruvate with production of ATP, the mitosome seems to be limited to the assembly of the FeS clusters only. A study of the proteins of the mitosome show the parts are there to make the FeS clusters, but that there are not the enzymes needed to break down pyruvate and produce ATP.


A study trying to quantify the amount of methane
gas produced by cows was carried out recently
in Argentina. The method involved a big backpack
and a delicately placed rubber hose. At some point,
scientist A approached scientist B and said, I’ve
got a great idea….”
Other hydrogenosome-containing organisms include the anaerobic unicellular fungus, Neocallimastix frontalis (it lives in the guts of rumen animals like cows). N. frontalis byproducts are used by gut methanogens (methane-producing bacteria) and therefore contributes to the generous amount of gas produced by cows. Many estimates name dairy and beef cattle flatulence as a bigger source of greenhouse gases than automobiles!

Another hydrogenosome-containing protozoan is Nyctotherus ovalis. It lives in the GI tract of cockroaches, and efficiently works with an archaeal bacterium that uses the hydrogen that the hydrogenosomes release. Just one more reason that cockroaches will outlast us all. The fact that some fungi and some protozoans have hydrogenosomes indicates that this organelle has evolved independently from mitochondria at least three different times in history – they must be a good idea.

Even with the exception of anaerobic protists and fungi, it was believed until just recently that at least all multicellular eukaryotic (metazoan) organisms depended aerobic respiration for energy production. However, there are even metazoan exceptions. A 2010 study of the bottom of the Mediterranean Sea found three different animals that survive without using oxygen and therefore don’t have mitochondria.

The deepest basin of the Med, near Greece, is nearly anoxic (an environment without oxygen).  In the muds of this basin were found three loriciferan (lorici = corsette and fera = bearing, so organisms with a sort of girdle) species that live in this area all the time. Other animals can survive in an anoxic environment for a while, but they don’t call it home.


Loriciferans weren’t even discovered until 1983.
Now we have some that live as anaerobes. Most
species of this phylum live in the deep waters,
but only a few are obligate anaerobes, meaning
they can only perform anaerobic respiration.
Oxygen can be damaging, it likes to scavenge
electrons, I wonder if it is toxic to the loriciferans.
These new loriciferans have hydrogenosomes instead of mitochondria, and produce ATP in the same ways as T. vaginalis and the other anaerobic eukaryotes. This is a completely new door being opened in biology, because the multicellular animals evolved after Earth turned from an anoxic environment to a place where oxygen was plentiful. It seems that even some of the more advanced organisms don’t have a problem reverting to more ancient systems if they find themselves in a place where they need it.

Would you believe that some of your cells might not have mitochondria? Well, about 26 trillion of your cells (if you’re an adult male) are amitochondrial – your red blood cells. That’s right; the erythrocytes that deliver oxygen to your cells in order so they can make ATP in their mitochondria don’t have any mitochondria of their own! In an attempt to carry as much oxygen as possible (bound to a big molecule called hemoglobin) your red blood cells have evicted their mitochondria.

This is probably a good idea, since making energy in the erythrocytes would use up the oxygen they are supposed to deliver to other cells. Instead, they act more like prokaryotes, and carry out glycolysis and lactic acid fermentation in their cytoplasm for the energy they need. To gain more room for hemoglobin, the RBCs have also done away with their nucleus.  They have no way to produce more proteins or repair themselves, so they work as long as they can and then they are replaced.

Old erythrocytes are phagocytosed (eaten) by macrophages in the spleen and liver and are destroyed. New RBCs (about 2 million per second) are produced in your bone marrow. The spleen also acts as a reservoir for blood cells, a ready supply for when you need them, but you can get along without it, you are just more susceptible to infections, since the spleen houses many white blood cells just waiting to recognize a pathogen that needs to be taught a lesson.


Human red blood cells (left) are round and biconcave,
but the camel RBCs are oval. You can see why so many
people believe they have a nucleus, but what you are seeing
is their biconcave side staining darker. The large cell in the
middle is an immune cell.
Anucleate (a = without, and nucleate = pertaining to a nucleus) erythrocytes are the norm for mammals. Many people think that camels are the exception, that they have nucleated RBCs, but this is not so. But they do have ovoid RBCs. When they run low on water, camels can remove water from their blood and use it in their cells. This leaves their blood thicker and harder to push through the small capillaries. Round RBCs would be impossible to squeeze through when the blood is viscous, so the camel has evolved RBCs that are longer in one direction and smaller in the other, to help blood flow in times of dehydration.

On the other hand, almost all non-mammalian vertebrates do have erythrocytes that do have nuclei. The only exceptions are a few salamander species that have some anucleate erythrocytes. For example, 95% of the Batrachoseps attenuatus salamander’s RBCs are anucleate. There is also the pearlside fish which is known to have non-nucleated red blood cells.

However, the crocodile icefish is even a bigger exception; it is the only vertebrate animal that has gotten rid of its RBCs altogether. This species lives in cold, highly oxygenated waters. The oxygen it needs just travels in the blood as a dissolved gas and is carried to every cell. These fish have even lost the DNA for making hemoglobin – now that is efficiency!


Given our apparent complexity, it is amazing
just how few genes humans have; the grape
has almost 30% more. The chicken doesn’t have
many fewer than us, and we don’t have to worry
about laying eggs. What is more amazing is that nine
years after the completion of the human genome
project, we still aren't exactly sure how many
genes we have.
Or is it? We have recently discovered that the majority of proteins have more than one function. Scientists gave this idea more thought when the results of the human genome project started to role in and we discovered far fewer genes than we expected. It is now accepted that humans have about 22,000 genes, not even as many as the grape, which has 31,000. Even the lowly fruit fly has 15,000 genes! How do we get so many functions out of so few gene products? Multitasking!

Take hemoglobin for example, it doesn’t just carry oxygen in the blood. It also acts as an antioxidant in several types of immune cells, and in certain neurons. It is a regulator of iron uptake and metabolism, since it carries iron at its core. It destroys nitric oxide, which is one reason why the little blue pill doesn’t work forever. You have to wonder what else the crocodile icefish has lost by giving up its hemoglobin and how it has made up for these losses. One change probably requires many more to be made as well.

We have seen how some organisms get along without mitochondria. What about the other end of the energy equation? Plants can make their own carbohydrate in the chloroplast – but is that what makes it a plant? Let’s look at this next time.


Roberto Danovaro, Antonio Dell'Anno1, Antonio Pusceddu, Cristina Gambi1, Iben Heiner and Reinhardt Møbjerg, & Kristensen (2010). The first metazoa living in permanently anoxic conditions. BMC Biology DOI: 10.1186/1741-7007-8-30

For more information or classroom activities on hydrogenosome, FeS cluster protein, loricifera, erythrocyte, see:


Hydrogenosome –

FeS cluster protein –

Loricifera –

Erythrocytes –

Thursday, November 9, 2017

The Evolution Of Cooperation

Biology concepts – biological timeline, serial endosymbiosis, endocystosis, evolution


Taxonomy, the placing of species in different
groups based on their characteristics, changes
everyday – literally everyday – organisms are
placed in different groups and groups are created
and eliminated. That better be a temporary tattoo!
If we look at the 3.5 billion year history of life on Earth, we see that out planet was lifeless for almost a quarter of its span, and animals have been around just a short blip of time, a mere 760 million years. Often, it seems that the big numbers to get in the way of understanding the time line as a whole.

If we treat the entire history of earth as one year, we might get a clearer picture. Earth coalesces from space dust on January 1st, but it isn’t until March 22nd that we find the first evidence of life. These most primitive fossils are of the prokaryotes called Archaea (Greek for “ancient”). Not long after this, maybe a week or so, the eubacteria and Archaea separate from one another.

Then we have to wait until August 7th to find a big change; the first eukaryotic organisms are seen. These represent a fundamental change in the organisms, having nuclei and membrane bound organelles. It's amazing that we must travel 3/4 through our one year time line before we see a cell that looks somewhat like ours!


Here is one of the Namibia sponge fossils recently
discovered in Africa. It represents the oldest animal
in the fossil record. Just how that was recognized as a
fossil is beyond me – I think I have six of those in my
garden!
Later in the year, around October 30th at noon, we see the first animals. Fossils of Namibia sponges in Africa were first reported in February of 2012. This fossils are 100 million years older than the previously oldest animal remains, so our new data means that animals have been around for an additional week in our time line of a year.

Insects appear about Nov. 26th, while mammals first show up around Dec. 8th. The dinosaurs became extinct sometime in the afternoon of Dec. 26th, so they had very little time to play with their Christmas presents. Homo sapiens (us) didn’t appear on the doorstep looking for holiday cheer until 11:40 pm on New Years Eve, Dec. 31st!

Our time line analogy shows us that prokaryotes are the wise old ancestors; we aren’t even old enough to be rebellious teenagers, although we still think we know everything. The key question is: how did we progress to analogy-makers from single celled Archaea? If we put together several of the topics we have been discussing in the past three weeks, we may come up with an interesting step in the process. Our clues include:

1) Microcompartments exist in bacteria, like organelles, and they also exist in eukaryotic cells, especially in nucleus' function. This links eukaryotes to prokaryotes.

2) Sometimes cells will engulf objects, parts of other cells, or other cells. Depending on the size of the particle or cell, we may call this endocytosis or phagocytosis, and is similar to how we saw keratinocytes take up melanosomes.

3) Three eukaryotic organelles, the nucleus, the mitochondria, and the chloroplast have double membranes, and they each have their own DNA.

4) There are two different types of prokaryotes, archaea and bacteria.

Bacterial microcompartments give prokaryotes some compartmentalization in order to carry out necessary chemical reactions. Eukaryotes also have some prokaryotic microcompartment remnants, like the nuclear vault complex. This shows crossover between prokaryotes and eukaryotes, and gives us clues about eukaryotic origins. In fact, the currently accepted theory about the evolution of organelles - the very thing that makes cells eukaryotic - has to do with both types of prokaryotes - archaea and bacteria.


There are three types of endocytosis (with exceptions).
Endocystosis of large objects and cells is called phagocytosis.
Internalization of very small molecules and fluid is called
pinocytosis. Other molecules of various sizes have specific
receptors that recognize them on the cell surface. They are
brought in by receptor-mediated endocytosis. Notice that no
matter what method is used, the internalized particle ends up
surrounded by part of the cell membrane.
The key to their interrelationship has to do with endocytosis (endo = into, cyto = cell). Most prokaryotic and eukaryotic cells eat other cells; they do it all the time – it is how heterotrophic organisms (those that can't make their own carbohydrates, ie. non-plants) gain their nutrients. We do it too, just on a larger scale; we eat millions of cells at a time; often these millions of cells can take the shape of a steak or a carrot.

When a cell, protein, other molecule is engulfed by another cell, it is wrapped in a portion of the aggressor cell’s membrane. The naked molecule is now contained in a vesicle, a membrane bound sac, like the melanosome. If the endocytosed material is an entire cell, something that has its own membrane, then it ends up with two membranes, just like the mitochondrion, chloroplast, and nucleus.

Most often, when one prokaryote phagocytoses another, the story is over….gulp, yum, digest. But scientists believe that long ago (sometime in the first week of August in our time line) an endocytosed cell did not go gentle into that good night. Instead, it took up residence in the cell that ate it. In this rare case, it turned out that both cells gained from the situation.

The endocytosed cell was protected from other predators and had a ready supply of nutrients from the parent cell. The captured cell made lots of ATP, but it didn’t need much because it was being supplied with everything it needed; it didn't need to make energy to move or hunt or escape. Most of its ATP production went unused. Perhaps it moved this excess ATP out into the parent cell. So the parent cell gained a source of ATP production. This was mutualism, a type of symbiosis in which both parties benefit.


Clownfish clean the sea anemone and keep it
parasite free. The poisonous anemone provides
a safe environment for the clown fish; no
unwanted house guests! This is a good example of
mutualistic symbiosis. Bet you didn’t know you
learned things from Finding Nemo.
Imagine if the same thing happened with a cyanobacterium, a cell that could perform photosynthesis. The same sort of symbiosis might be set up, with the endocystosed cell providing carbohydrates and the parent cell providing protection.

Now imagine that these captured cells, the photosynthesizer and the ATP maker, replicated themselves inside their parent cells just as they would if they were outside, living on their own. They could easily do this since they still retained their own DNA and cell division mechanisms.

This is in fact what scientists believe happened. The endocytosed cells that produced extra ATP evolved into our mitochondria. Endocytosed cells that could do photosynthesis became the chloroplasts of plants. Not all cells are plants because not all cells with an ancestral mitochondria also ate a cyanobacterium. The fact that plants cells have mitochondria as well as chloroplasts tells us that plant cells developed AFTER cells with mitochondrial ancestors.

But the nucleus may be a tougher nut to crack. It may be that an endocytosed cell good at keeping DNA safe and producing ribosomes became the nucleus, by endocytosis. The data suggests that our DNA is closer to archaeal DNA than bacterial DNA, so it would have been a eubacteria endocytosing an archaea. Or perhaps the archaea invaded the bacterium rather than being endocytosed. The nucleus does have a double membrane and uses some prokaryotic microcompartments to this day, so this could make sense.

But other theories also exist, including one that says an intermediate eukaryotic cell, theoretically called a chronocyte, had developed some organelles on its own or by endocytosis, including a cytoskeleton. This internal structure allowed the cell become bigger, and engulf a cell large enough to evolve into the nucleus.

Another theory uses an evolutionary exception as its basis. Some aquatic bacteria, called planctomycetes (planktos = drifting and mycete = fungus-like), have an organized interior, with something that looks like a nucleus with pores, called a nucleoid. In fact, when they were first discovered, planctomycetes were mistaken for small fungal cells. However, we know they are prokaryotes by DNA sequencing. I thought prokaryotes didn’t have nuclei! Remember that in biology, there is almost always an exception. The planctomycete nucleoid structure suggests that the nucleus may have evolved on its own, without endocytosis.


The planctomycete species, Pirellula (latin for small pear),
is an exceptional bacterium. It has a primitive nucleus
and a stalk that makes it look like a eukaryotic
fungal cell. It was misidentified for a long time, and is
a prime example of why the tattoo above was a bad
idea!
Finally, another theory posits that the nucleus originated from a virus infecting a primitive prokaryote, and this internalized virus forming a nucleus or causing the cell to be predated by another cell. Even though there are different theories for the nucleus, we can see that the three organelles that have double membranes look like they could have been endocytosed cells, that then evolved into the organelles we see today. Endocytosis resulted in symbiosis, so the theory of organelle development is called endosymbiosis.

Endosymbiosis is a cool idea and has lots of support. Besides the double membrane evidence, lets look at how dividing cells get more mitochondria and chloroplasts. These organelles replicate on their own by binary fission, just like bacteria. They can replicate on their own because they have their own DNA. Mitochondrial DNA (mtDNA) and chloroplast DNA (chDNA) are smaller pieces of DNA than nuclear chromosomes, mtDNA and chDNA look much like the small genomes of bacteria. They are also circular pieces of DNA, not linear like our nuclear chromosomes.

By replicating through binary fission, they can be portioned in the dividing cell so that each daughter gets some of these crucial organelles. But it isn’t as if mitochondria and chloroplasts of today look just like the engulfed ancestors. Mitochondrial and chloroplast genomes are greatly reduced from what they used to be.


Serial endocytosis is also called secondary (2˚) endocytosis.
This refers to the movement of DNA from internalized
cells to the nucleus of the endocytosing cell by lateral
gene transfer. This strengthens the symbiotic relationship
between the two organisms until they can be considered
one total organism.
The mitochondria only codes for about thirteen proteins, just enough for it to replicate on its own. The DNA that codes for the rest of the 1500 or so proteins needed for mitochondrial function have been transferred to the nucleus over time. For a discussion of the chloroplast and its horizontal gene transfer to the nucleus, see the posts on C. litorea, the photosynthetic sea slug.

We know that these gene transfers were actual events based on the structure and nucleotide ordering of the mitochondrial and photosynthetic sequences in the eukaryotic chromosomes; they are structured and coded in ways that are typically bacterial. Because of this slow transfer of DNA to the nucleus, endosymbiosis has evolved over time, changing again and again until we got today’s organelles. Therefore, our idea of organelle development is sometimes called serial endosymbiosis theory (SET), because it must have had several different changes through evolution.

Now that we have laid out the evidence and sense for the serial endosymbiosis theory, next week we can talk about some exceptions that show us that that some organisms just can't stick with something that seems to work. Some life just has to take the road less traveled.



Okie JG, Smith VH, & Martin-Cereceda M (2016). Major evolutionary transitions of life, metabolic scaling and the number and size of mitochondria and chloroplasts. Proceedings. Biological sciences / The Royal Society, 283 (1831) PMID: 27194700

Kostygov AY, Dobáková E, Grybchuk-Ieremenko A, Váhala D, Maslov DA, Votýpka J, Lukeš J, & Yurchenko V (2016). Novel Trypanosomatid-Bacterium Association: Evolution of Endosymbiosis in Action. mBio, 7 (2) PMID: 26980834

Erbilgin O, McDonald KL, & Kerfeld CA (2014). Characterization of a planctomycetal organelle: a novel bacterial microcompartment for the aerobic degradation of plant saccharides. Applied and environmental microbiology, 80 (7), 2193-205 PMID: 24487526



For more information or classroom activities on history of life time lines, endocytosis,  serial endosymbiosis theory, evolution of eukaryotes, or planctomycetes, see:

History of life on Earth timelines -

Endocytosis –

Serial endosymbiosis theory –

Evolution of eukaryotes –

Planctomycetes –